Mir-10-P1b

MirGeneDB ID

Hmi-Mir-10-P1b

Family name

MIR-10 (all species)

Species

Panther worm (Hofstenia miamia)

MiRBase ID

Paralogues

Hmi-Mir-10-P1a

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1b-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1b-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cja-Mir-10-P1b-v1 Cli-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b2-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1b-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Gga-Mir-10-P1b-v1 Gja-Mir-10-P1b-v1 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b2-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1b Lch-Mir-10-P1b Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b2 Mdo-Mir-10-P1b-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mmr-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v1 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Neu-Mir-10-P1b-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rph-Mir-10-P1 Sha-Mir-10-P1b-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1b-v1 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b4-v1 Xtr-Mir-10-P1b-v1

Node of Origin (locus)

H. miamia

Node of Origin (family)

Eumetazoa

Genome context
(Hofstenia_miamia.HmiaM1.dna.nonchromosomal)

SCFE01000023.1: 370012-370067 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1b)

Mir-10-P1a SCFE01000023.1: 368904-368959 [-] UCSC Ensembl
Mir-10-P1b SCFE01000023.1: 370012-370067 [-] UCSC Ensembl

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

UCUACACAAUGUAAAAGCGGCUGUGUGUCAUACCCUGUAUUUCCGAAGGUUUUCGAAAGUUGAACACCUUUGAUUUGCAGGGCGCAUGCAACUCAGCCCCCGUAUCUUCAAAAUCA

Get precursor sequence

Structure

        10        20        30          40        50        
UCUACACAAUGUAAAAGC     U  GU   A--|      UU  C      U  CGAA 
                  GGCUG GU  CAU   CCCUGUA  UC GAAGGU UU    \
                  CCGAC CA  GUA   GGGACGU  AG UUUCCA AA    A
ACUAAAACUUCUAUGCCC     U  AC   CGC^      UU  -      C  GUUG 
    110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To	To

Mature sequence

Hmi-Mir-10-P1b_5p

mirBase accession

None

Sequence

0- UACCCUGUAUUUCCGAAGGUUUU -23

Get sequence

Star sequence

Hmi-Mir-10-P1b_3p* (predicted)

mirBase accession

None

Sequence

34- CACCUUUGAUUUGCAGGGCGCA -56

Get sequence