Mir-10-P1b-v1

MirGeneDB ID

Sha-Mir-10-P1b

Family name

MIR-10 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-10b

Paralogues

Sha-Mir-10-P1c-v1 Sha-Mir-10-P2b Sha-Mir-10-P2c Sha-Mir-10-P2d Sha-Mir-10-P3b Sha-Mir-10-P3c Sha-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1b-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1b-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cja-Mir-10-P1b-v1 Cli-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b2-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1b-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Gga-Mir-10-P1b-v1 Gja-Mir-10-P1b-v1 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b2-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1b Lch-Mir-10-P1b Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b2 Mdo-Mir-10-P1b-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mmr-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v1 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Neu-Mir-10-P1b-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1b-v1 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b4-v1 Xtr-Mir-10-P1b-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(DEVIL_add)

GL849635.1: 2022371-2022432 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1b-v1)

Mir-10-P1b-v1 GL849635.1: 2022371-2022432 [+] UCSC Ensembl
Mir-10-P1b-v2 GL849635.1: 2022372-2022431 [+] UCSC Ensembl

Variant

Sha-Mir-10-P1b-v1

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

AUAACAGAAUGUUAUUACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGGUAUUUACAUAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCACAUUUCUG

Get precursor sequence

Structure

        10          20        30        40        50        60 
AUAACAGAAUGUUAUUA--|    U        A    G     C         GUGGUAUU 
                   CGUUG CUAUAUAU CCCU UAGAA CGAAUUUGU        \
                   GUAGC GGUAUAUA GGGG AUCUU GCUUAGACA        U
GUCUUUACACUUCAAAAAC^    U        A    -     A         CUGAUACA 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-10-P1b-v1_5p

mirBase accession

MIMAT0022799

Sequence

0- UACCCUGUAGAACCGAAUUUGU -22

Get sequence

Star sequence

Sha-Mir-10-P1b-v1_3p*

mirBase accession

None

Sequence

41- AGAUUCGAUUCUAGGGGAAUA -62

Get sequence

Variant

Sha-Mir-10-P1b-v2

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

UAACAGAAUGUUAUUACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGGUAUUUACAUAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCACAUUUCU

Get precursor sequence

Structure

        10          20        30        40        50          
UAACAGAAUGUUAUUAC--|   U        A    G     C          UGGUAUU 
                   GUUG CUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC       U
UCUUUACACUUCAAAAACG^   U        A    -     A          UGAUACA 
.       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-10-P1b-v2_5p

mirBase accession

MIMAT0022799

Sequence

0- ACCCUGUAGAACCGAAUUUGUG -22

Get sequence

Star sequence

Sha-Mir-10-P1b-v2_3p*

mirBase accession

None

Sequence

39- CAGAUUCGAUUCUAGGGGAAU -60

Get sequence