MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-10-P3d2

Family name MIR-10 (all species)
Seed CCCUGAG
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b1-v2  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c1-v2  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2a-v2  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1c2b-v2  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mal-Mir-10-P2c2  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mal-Mir-10-P3c2  Mal-Mir-10-P3d1 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Ami-Mir-10-P3d  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gmo-Mir-10-P3d2  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Loc-Mir-10-P3d  Mdo-Mir-10-P3d  Mml-Mir-10-P3d  Mmu-Mir-10-P3d  Mun-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ovu-Mir-10-P3  Pbv-Mir-10-P3d  Pmi-Mir-10-P3  Rno-Mir-10-P3d  Sha-Mir-10-P3d  Sko-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Tni-Mir-10-P3d2  Xbo-Mir-10-P3  Xtr-Mir-10-P3d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884727.1: 1558520-1558581 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGACAAAAAGCAAUCUGUACCUCUCUCAUUCCCUGAGACCCUAACUUGUGACGUUUGGCUGUGAUGUGCACGGGUUGGGUUCUUGGGAGCUGCGAGGGGCACUCACACAUCUCUCUAACCU
Get precursor sequence
Structure
        10          20         30        40        50        60
CAGACAAAAAGCAAUCU--  A      U  -|    U    C           ACGUUUGG 
                   GU CCUCUC CA UUCCC GAGA CCUAACUUGUG        C
                   CA GGGGAG GU GAGGG UUCU GGGUUGGGCAC        U
UCCAAUCUCUCUACACACU  C      C  C^    -    U           GUGUAGUG 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P3d2_5p
mirBase accessionNone
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Star sequence

Mal-Mir-10-P3d2_3p*
mirBase accessionNone
Sequence 
40- ACGGGUUGGGUUCUUGGGAGCU -62
Get sequence