MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-10-P3d

Family name MIR-10 (all species)
Seed CCCUGAG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-125b-1
Paralogues Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1b-v2  Cfa-Mir-10-P1c-v1  Cfa-Mir-10-P1c-v2  Cfa-Mir-10-P2b  Cfa-Mir-10-P2c  Cfa-Mir-10-P2d  Cfa-Mir-10-P3b  Cfa-Mir-10-P3c 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Ami-Mir-10-P3d  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2  Mdo-Mir-10-P3d  Mml-Mir-10-P3d  Mmu-Mir-10-P3d  Mun-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ovu-Mir-10-P3  Pbv-Mir-10-P3d  Pmi-Mir-10-P3  Rno-Mir-10-P3d  Sha-Mir-10-P3d  Sko-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2  Xbo-Mir-10-P3  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4  Xtr-Mir-10-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(canFam3_add)
chr5: 12097672-12097733 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3d)
Let-7-P1d chr5: 12052802-12052868 [+] UCSC Ensembl
Mir-10-P3d chr5: 12097672-12097733 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAAGAACAAUUUGUUGCGCUCCUCUCAAUCCCUGAGACCCUAACUUGUGAUGUUUACCGUUUAAAUCCACGGGUUAGGCUCUUGGGAGCUGCGAGUCGUGCCUUUGCAUCCUGGAAAUUU
Get precursor sequence
Structure
        10          20        30         40        50        60
AGAAAGAACAAUUUGUU--    UC   U  A-|   U    C           AUGUUUAC 
                   GCGC  CUC CA  UCCC GAGA CCUAACUUGUG        C
                   CGUG  GAG GU  AGGG UUCU GGAUUGGGCAC        G
UUUAAAGGUCCUACGUUUC    CU   C  CG^   -    C           CUAAAUUU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-10-P3d_5p

mirBase accessionMIMAT0006670
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-125b
miRDB: MIMAT0006670
Star sequence

Cfa-Mir-10-P3d_3p*

mirBase accessionNone
Sequence
40- ACGGGUUAGGCUCUUGGGAGCU -62
Get sequence