MirGeneDB 2.1
MirGeneDB ID

Cfa-Mir-10-P2b

Family name MIR-10 (all species)
Seed ACCCGUA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-99b
Paralogues Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1b-v2  Cfa-Mir-10-P1c-v1  Cfa-Mir-10-P1c-v2  Cfa-Mir-10-P2c  Cfa-Mir-10-P2d  Cfa-Mir-10-P3b  Cfa-Mir-10-P3c  Cfa-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2b  Ami-Mir-10-P2b  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2b  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cpi-Mir-10-P2b  Cpo-Mir-10-P2b  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2b  Gja-Mir-10-P2b  Hsa-Mir-10-P2b  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2b  Lgi-Mir-10-P2  Mml-Mir-10-P2b  Mmu-Mir-10-P2b  Mun-Mir-10-P2b  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2b  Obi-Mir-10-P2  Ocu-Mir-10-P2b  Ovu-Mir-10-P2  Pbv-Mir-10-P2b  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Rno-Mir-10-P2b  Sha-Mir-10-P2b  Sko-Mir-10-P2  Spt-Mir-10-P2b  Sto-Mir-10-P2b  Tca-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xtr-Mir-10-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(canFam3_add)		 chr1: 105400925-105400984 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2b)		 Mir-10-P3b chr1: 105400273-105400332 [-] UCSC Ensembl
Let-7-P1b chr1: 105400740-105400806 [-] UCSC Ensembl
Mir-10-P2b chr1: 105400925-105400984 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGGGGCCCGGAUUCCUGGGUCCUGGCACCCACCCGUAGAACCGACCUUGCGGGGCCUUCGCCGCACACAAGCUCGAGUCUGUGGGUCUGUGUCGGGGGCUCACCAUCGCGGCUGGGGUC
Get precursor sequence
Structure
        10         20         30        40        50         
CGGGGGCCCGGAUUCCU-   -|        CC         AC   C    CGGGGCCU 
                  GGG UCCUGGCAC  ACCCGUAGA  CGA CUUG        U
                  CUC GGGGCUGUG  UGGGUGUCU  GCU GAAC        C
CUGGGGUCGGCGCUACCA   G^        UC         GA   C    ACACGCCG 
.       110       100        90        80        70        60
Deep sequencing
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CommentBased on the 3' moR reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-10-P2b_5p
mirBase accessionMIMAT0006607
Sequence 
0- CACCCGUAGAACCGACCUUGCG -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-99b
miRDB: MIMAT0006607
Star sequence

Cfa-Mir-10-P2b_3p*
mirBase accessionNone
Sequence 
38- CAAGCUCGAGUCUGUGGGUCUG -60
Get sequence