MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-10-P2b1

Family name MIR-10 (all species)
Seed ACCCGUA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-100-1
Paralogues Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c3-v2  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1c4-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P2c4  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2b  Ami-Mir-10-P2b  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2b  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2b  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cpi-Mir-10-P2b  Cpo-Mir-10-P2b  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Ete-Mir-10-P2b  Gja-Mir-10-P2b  Hsa-Mir-10-P2b  Isc-Mir-10-P2  Lan-Mir-10-P2  Lch-Mir-10-P2b  Lgi-Mir-10-P2  Mml-Mir-10-P2b  Mmu-Mir-10-P2b  Mun-Mir-10-P2b  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2b  Obi-Mir-10-P2  Ocu-Mir-10-P2b  Ovu-Mir-10-P2  Pbv-Mir-10-P2b  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Rno-Mir-10-P2b  Sha-Mir-10-P2b  Sko-Mir-10-P2  Spt-Mir-10-P2b  Sto-Mir-10-P2b  Tca-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xtr-Mir-10-P2b 
Node of Origin (locus) X. laevis
Node of Origin (family) Eumetazoa
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030736.1: 115939452-115939509 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2b1)		 Mir-10-P3b NC_030736.1: 115921680-115921738 [-] UCSC Ensembl
Let-7-P1b3 NC_030736.1: 115937612-115937678 [-] UCSC Ensembl
Mir-10-P2b1 NC_030736.1: 115939452-115939509 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUAUUGUACAUGUAUUGCUGGUUGCCAUAAACCCGUAGAUCCGAACUUGUGCUGUGCCCCUCUCACAAGCUCGAGUGUGCGGGUCUGUGUCGGCUUGGCUACGGCGGCAUGAGUGAG
Get precursor sequence
Structure
        10         20         30        40        50        
UAUAUUGUACAUGUAUU-   -|    C    A       G UC   A      CUGUG 
                  GCU GGUUG CAUA ACCCGUA A  CGA CUUGUG     C
                  CGG UCGGC GUGU UGGGCGU U  GCU GAACAC     C
GAGUGAGUACGGCGGCAU   U^    U    C       G GA   C      UCUCC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-10-P2b1_5p
mirBase accessionMIMAT0046409
Sequence 
0- AACCCGUAGAUCCGAACUUGUG -22
Get sequence
Star sequence

Xla-Mir-10-P2b1_3p*
mirBase accessionMIMAT0046411
Sequence 
36- CAAGCUCGAGUGUGCGGGUCUG -58
Get sequence