Let-7-P1b3

MirGeneDB ID

Xla-Let-7-P1b3

Family name

LET-7 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-let-7a

Paralogues

Xla-Let-7-P1b4 Xla-Let-7-P1c3 Xla-Let-7-P1c4 Xla-Let-7-P2a1c Xla-Let-7-P2a1d Xla-Let-7-P2a2c Xla-Let-7-P2a2d Xla-Let-7-P2a3d Xla-Let-7-P2b2c Xla-Let-7-P2b2d Xla-Let-7-P2b3c Xla-Let-7-P2b3d Xla-Let-7-P2c2 Xla-Let-7-P2c3c Xla-Let-7-P2c3d Xla-Let-7-P2c4

Orthologues

Aae-Let-7 Aca-Let-7-P1b Aga-Let-7 Agr-Let-7 Ami-Let-7-P1b Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1b Cfa-Let-7-P1b Cin-Let-7-P1 Cja-Let-7-P1b Cpi-Let-7-P1b Cpo-Let-7-P1b Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1b Egr-Let-7 Esc-Let-7 Ete-Let-7-P1b Gja-Let-7-P1b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1b Isc-Let-7 Laf-Let-7-P1b Lan-Let-7 Lch-Let-7-P1b Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1b Mdo-Let-7-P1b Mgi-Let-7 Mml-Let-7-P1b Mmr-Let-7-P1b Mmu-Let-7-P1b Mom-Let-7 Mun-Let-7-P1b Npo-Let-7 Oan-Let-7-P1b Obi-Let-7 Ocu-Let-7-P1b Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1b Pau-Let-7 Pbv-Let-7-P1b Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1b Rph-Let-7 Sha-Let-7-P1b Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1b Spu-Let-7 Sro-Let-7 Sto-Let-7-P1b Tca-Let-7 Tur-Let-7 War-Let-7 Xbo-Let-7 Xtr-Let-7-P1b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030736.1: 115937612-115937678 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P1b3)

Mir-10-P3b NC_030736.1: 115921680-115921738 [-] UCSC Ensembl
Let-7-P1b3 NC_030736.1: 115937612-115937678 [-] UCSC Ensembl
Mir-10-P2b1 NC_030736.1: 115939452-115939509 [-] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

ACCCUGGCUCCUGCUCGGUGAGCUCCAGGCUGAGGUAGUAGGUUGUAUAGUUGAGGAUAACACCAAAGGAGAUAACUGUACAGCCUCCUAUCUUUCCCUGGGGCUUUGCCAUAACAACAAAGCCUCC

Get precursor sequence

Structure

        10          20        30        40        50        60   
ACCCUGGCUCCUGCUCGGU--|         CU       U             GAGGAUAACA 
                     GAGCUCCAGG  GAGGUAG AGGUUGUAUAGUU          \
                     UUCGGGGUCC  UUCUAUC UCCGACAUGUCAA          C
CCUCCGAAACAACAAUACCGU^         CU       C             UAGAGGAAAC 
     120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Let-7-P1b3_5p

mirBase accession

MIMAT0046395

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

Get sequence

Star sequence

Xla-Let-7-P1b3_3p*

mirBase accession

MIMAT0046396

Sequence

45- CUGUACAGCCUCCUAUCUUUCC -67

Get sequence