MirGeneDB 3.0
MirGeneDB ID

Xla-Let-7-P1b3

Family name LET-7 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-let-7a
Paralogues Xla-Let-7-P1b4  Xla-Let-7-P1c3  Xla-Let-7-P1c4  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xla-Let-7-P2a2c  Xla-Let-7-P2a2d  Xla-Let-7-P2a3d  Xla-Let-7-P2b2c  Xla-Let-7-P2b2d  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xla-Let-7-P2c2  Xla-Let-7-P2c3c  Xla-Let-7-P2c3d  Xla-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P1b  Aga-Let-7  Agr-Let-7  Ami-Let-7-P1b  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P1b  Cfa-Let-7-P1b  Cin-Let-7-P1  Cja-Let-7-P1b  Cpi-Let-7-P1b  Cpo-Let-7-P1b  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P1b  Egr-Let-7  Esc-Let-7  Ete-Let-7-P1b  Gja-Let-7-P1b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P1b  Isc-Let-7  Laf-Let-7-P1b  Lan-Let-7  Lch-Let-7-P1b  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P1b  Mdo-Let-7-P1b  Mgi-Let-7  Mml-Let-7-P1b  Mmr-Let-7-P1b  Mmu-Let-7-P1b  Mom-Let-7  Mun-Let-7-P1b  Npo-Let-7  Oan-Let-7-P1b  Obi-Let-7  Ocu-Let-7-P1b  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P1b  Pau-Let-7  Pbv-Let-7-P1b  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P1b  Rph-Let-7  Sha-Let-7-P1b  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P1b  Spu-Let-7  Sro-Let-7  Sto-Let-7-P1b  Tca-Let-7  Tur-Let-7  War-Let-7  Xbo-Let-7  Xtr-Let-7-P1b 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030736.1: 115937612-115937678 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1b3)		 Mir-10-P3b NC_030736.1: 115921680-115921738 [-] UCSC Ensembl
Let-7-P1b3 NC_030736.1: 115937612-115937678 [-] UCSC Ensembl
Mir-10-P2b1 NC_030736.1: 115939452-115939509 [-] UCSC Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
ACCCUGGCUCCUGCUCGGUGAGCUCCAGGCUGAGGUAGUAGGUUGUAUAGUUGAGGAUAACACCAAAGGAGAUAACUGUACAGCCUCCUAUCUUUCCCUGGGGCUUUGCCAUAACAACAAAGCCUCC
Get precursor sequence
Structure
        10          20        30        40        50        60   
ACCCUGGCUCCUGCUCGGU--|         CU       U             GAGGAUAACA 
                     GAGCUCCAGG  GAGGUAG AGGUUGUAUAGUU          \
                     UUCGGGGUCC  UUCUAUC UCCGACAUGUCAA          C
CCUCCGAAACAACAAUACCGU^         CU       C             UAGAGGAAAC 
     120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Let-7-P1b3_5p
mirBase accessionMIMAT0046395
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Xla-Let-7-P1b3_3p*
mirBase accessionMIMAT0046396
Sequence 
45- CUGUACAGCCUCCUAUCUUUCC -67
Get sequence