Let-7-P1b

MirGeneDB ID

Sha-Let-7-P1b

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Let-7-P1c Sha-Let-7-P1d Sha-Let-7-P2a1 Sha-Let-7-P2a2 Sha-Let-7-P2a3 Sha-Let-7-P2b1 Sha-Let-7-P2b2 Sha-Let-7-P2c1 Sha-Let-7-P2c2 Sha-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1b Aga-Let-7 Agr-Let-7 Ami-Let-7-P1b Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1b Cfa-Let-7-P1b Cin-Let-7-P1 Cja-Let-7-P1b Cpi-Let-7-P1b Cpo-Let-7-P1b Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dre-Let-7-P1b1 Dre-Let-7-P1b2 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1b Egr-Let-7 Esc-Let-7 Ete-Let-7-P1b Gja-Let-7-P1b Gmo-Let-7-P1b1 Gmo-Let-7-P1b2 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1b Isc-Let-7 Laf-Let-7-P1b Lan-Let-7 Lch-Let-7-P1b Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1b Mal-Let-7-P1b1 Mal-Let-7-P1b2 Mdo-Let-7-P1b Mgi-Let-7 Mml-Let-7-P1b Mmr-Let-7-P1b Mmu-Let-7-P1b Mom-Let-7 Mun-Let-7-P1b Npo-Let-7 Oan-Let-7-P1b Obi-Let-7 Ocu-Let-7-P1b Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1b Pau-Let-7 Pbv-Let-7-P1b Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1b Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1b Spu-Let-7 Sro-Let-7 Sto-Let-7-P1b Tca-Let-7 Tni-Let-7-P1b1 Tni-Let-7-P1b2 Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P1b3 Xla-Let-7-P1b4 Xtr-Let-7-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(DEVIL_add)

GL850059.1: 74013-74079 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P1b)

Mir-10-P3b GL850059.1: 72927-72986 [-] UCSC Ensembl
Let-7-P1b GL850059.1: 74013-74079 [-] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

NNNNNNNNNNNNNNNNNNNNNNNNNNNGGCUGAGGUAGUAGGUUGUACAGUUGAGAAGGACACCUGUGGAGAUAACUGUACGGCUCACUAGCUUUCCCCGGGCUGUGCCCCGCACCGAAGGAGGGGA

Get precursor sequence

Structure

        10        20          30        40        50        60   
NNNNNNNNNNNNNNNNNNNNNNNNNNN--| CU   G    AG           GAGAAGGACA 
                             GG  GAG UAGU  GUUGUACAGUU          \
                             CC  UUC AUCA  CGGCAUGUCAA          C
AGGGGAGGAAGCCACGCCCCGUGUCGGGC^ CU   G    CU           UAGAGGUGUC 
     120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Let-7-P1b_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGGUUGUACAGUU -22

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Star sequence

Sha-Let-7-P1b_3p*

mirBase accession

None

Sequence

45- CUGUACGGCUCACUAGCUUUCC -67

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