MirGeneDB 2.1

MirGeneDB ID

Sha-Let-7-P1d

Family name LET-7 (all species)
Seed GAGGUAG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-let-7a
Paralogues Sha-Let-7-P1b  Sha-Let-7-P1c  Sha-Let-7-P2a1  Sha-Let-7-P2a2  Sha-Let-7-P2a3  Sha-Let-7-P2b1  Sha-Let-7-P2b2  Sha-Let-7-P2c1  Sha-Let-7-P2c2  Sha-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1d  Ami-Let-7-P1d  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1d  Cfa-Let-7-P1d  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1d  Cmi-Let-7-P1d  Cpi-Let-7-P1d  Cpo-Let-7-P1d  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1d  Dpu-Let-7  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1d  Gga-Let-7-P1d  Gja-Let-7-P1d  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Hme-Let-7  Hsa-Let-7-P1d  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1d  Lgi-Let-7  Loc-Let-7-P1d  Mal-Let-7-P1d1  Mal-Let-7-P1d2  Mdo-Let-7-P1d  Mml-Let-7-P1d  Mmu-Let-7-P1d  Mun-Let-7-P1d  Npo-Let-7  Oan-Let-7-P1d  Obi-Let-7  Ocu-Let-7-P1d  Ovu-Let-7  Pbv-Let-7-P1d  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1d  Sko-Let-7  Spt-Let-7-P1d  Spu-Let-7  Sto-Let-7-P1d  Tca-Let-7  Tgu-Let-7-P1d  Tni-Let-7-P1d1  Tni-Let-7-P1d2  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(DEVIL_add)
GL849656.1: 1022805-1022871 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1d)
Mir-10-P2d GL849656.1: 1017642-1017698 [+] UCSC Ensembl
Let-7-P1d GL849656.1: 1022805-1022871 [+] UCSC Ensembl
Mir-10-P3d GL849656.1: 1066124-1066185 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAGCCAUUGUGAUUGCACGCACCCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUGGGUCUUGCACAAAACACCAUGGUGAGA
Get precursor sequence
Structure
        10        20           30        40        50        60   
UCCAGCCAUUGUGAUUGCAC  ---|      UU   G   U             UAGAAUUACA 
                    GC   ACCCAGG  GAG UAG AGGUUGUAUAGUU          \
                    CG   UGGGUUC  UUC AUC UCCGACAUGUCAA          U
AGAGUGGUACCACAAAACA-  UUC^      CU   G   C             UAGAGGGAAC 
     120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Let-7-P1d_5p

mirBase accessionMIMAT0022801
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
Star sequence

Sha-Let-7-P1d_3p*

mirBase accessionNone
Sequence
45- CUGUACAGCCUCCUAGCUUUCC -67
Get sequence