MirGeneDB ID | Cmi-Let-7-P1d |
Family name |
LET-7 (all species) |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Let-7-P2a1
Cmi-Let-7-P2a2
Cmi-Let-7-P2a4
Cmi-Let-7-P2b2
Cmi-Let-7-P2b4
Cmi-Let-7-P2c1
Cmi-Let-7-P2c2
Cmi-Let-7-P2c3
Cmi-Let-7-P2c4
|
Orthologues |
Aae-Let-7
Aca-Let-7-P1d
Aga-Let-7
Agr-Let-7
Ami-Let-7-P1d
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P1d
Cfa-Let-7-P1d
Cin-Let-7-P1
Cja-Let-7-P1d
Cli-Let-7-P1d
Cpi-Let-7-P1d
Cpo-Let-7-P1d
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P1d
Dpu-Let-7
Dre-Let-7-P1d1
Dre-Let-7-P1d2
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P1d
Egr-Let-7
Esc-Let-7
Ete-Let-7-P1d
Gga-Let-7-P1d
Gja-Let-7-P1d
Gmo-Let-7-P1d1
Gmo-Let-7-P1d2
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P1d
Isc-Let-7
Laf-Let-7-P1d
Lan-Let-7
Lch-Let-7-P1d
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P1d
Mal-Let-7-P1d1
Mal-Let-7-P1d2
Mdo-Let-7-P1d
Mgi-Let-7
Mml-Let-7-P1d
Mmr-Let-7-P1d
Mmu-Let-7-P1d
Mom-Let-7
Mun-Let-7-P1d
Neu-Let-7-P1d
Npo-Let-7
Oan-Let-7-P1d
Obi-Let-7
Ocu-Let-7-P1d
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P1d
Pau-Let-7
Pbv-Let-7-P1d
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P1d
Rph-Let-7
Sha-Let-7-P1d
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P1d
Spu-Let-7
Sro-Let-7
Sto-Let-7-P1d
Tca-Let-7
Tgu-Let-7-P1d
Tni-Let-7-P1d1
Tni-Let-7-P1d2
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636213.1: 67723-67789 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Let-7-P1d) |
Mir-10-P2d
KI636213.1: 67012-67069 [+]
UCSC
Ensembl
Let-7-P1d
KI636213.1: 67723-67789 [+]
UCSC
Ensembl
Mir-10-P3d
KI636213.1: 89955-90016 [+]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
UGGGGGAGGGGAGCCAGUGUGCACUCAGGGUGAGGUAGUAGGUUGUAUAGUUUAGAGAUACACCAUGGGAGAUAGCUGUACAACCUCCUAGCUUUCCCUGGGGCGCAUGCAAAACAGCCCAGCCCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGGGGGAGGGGAGCCAG---| A U G U UAGAGAUACA
UGUGC CUCAGGG GAG UAG AGGUUGUAUAGUU \
ACGCG GGGUCCC UUC AUC UCCAACAUGUCGA C
GACCCGACCCGACAAAACGU^ - U G C UAGAGGGUAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Let-7-P1d_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Star sequence |
Cmi-Let-7-P1d_3p* |
mirBase accession | None |
Sequence |
45- CUGUACAACCUCCUAGCUUUCC -67
Get sequence
|