MirGeneDB ID | Mdo-Let-7-P1d |
Family name |
LET-7 (all species) |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-let-7a-2
|
Paralogues |
Mdo-Let-7-P1b
Mdo-Let-7-P2a1
Mdo-Let-7-P2a2
Mdo-Let-7-P2a3
Mdo-Let-7-P2b1
Mdo-Let-7-P2b2
Mdo-Let-7-P2c1
Mdo-Let-7-P2c2
Mdo-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P1d
Aga-Let-7
Agr-Let-7
Ami-Let-7-P1d
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P1d
Cfa-Let-7-P1d
Cin-Let-7-P1
Cja-Let-7-P1d
Cli-Let-7-P1d
Cmi-Let-7-P1d
Cpi-Let-7-P1d
Cpo-Let-7-P1d
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P1d
Dpu-Let-7
Dre-Let-7-P1d1
Dre-Let-7-P1d2
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P1d
Egr-Let-7
Esc-Let-7
Ete-Let-7-P1d
Gga-Let-7-P1d
Gja-Let-7-P1d
Gmo-Let-7-P1d1
Gmo-Let-7-P1d2
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P1d
Isc-Let-7
Laf-Let-7-P1d
Lan-Let-7
Lch-Let-7-P1d
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P1d
Mal-Let-7-P1d1
Mal-Let-7-P1d2
Mgi-Let-7
Mml-Let-7-P1d
Mmr-Let-7-P1d
Mmu-Let-7-P1d
Mom-Let-7
Mun-Let-7-P1d
Neu-Let-7-P1d
Npo-Let-7
Oan-Let-7-P1d
Obi-Let-7
Ocu-Let-7-P1d
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P1d
Pau-Let-7
Pbv-Let-7-P1d
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P1d
Rph-Let-7
Sha-Let-7-P1d
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P1d
Spu-Let-7
Sro-Let-7
Sto-Let-7-P1d
Tca-Let-7
Tgu-Let-7-P1d
Tni-Let-7-P1d1
Tni-Let-7-P1d2
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (monDom5_add) |
4: 226185497-226185563 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Let-7-P1d) |
Mir-10-P2d
4: 226180113-226180169 [+]
UCSC
Ensembl
Let-7-P1d
4: 226185497-226185563 [+]
UCSC
Ensembl
Mir-10-P3d
4: 226229993-226230054 [+]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
UCCAGCCAUUAUGACUGCACGCACCCAGGUUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACAUCAAGGGAGAUAACUGUACAGCCUCCUAGCUUUCCUUGGGUCUUGCACAAAACACCAUGGUGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCCAGCCAUUAUGACUGCAC ---| UU G U UAGAAUUACA
GC ACCCAGG GAG UAG AGGUUGUAUAGUU \
CG UGGGUUC UUC AUC UCCGACAUGUCAA U
AGAGUGGUACCACAAAACA- UUC^ CU G C UAGAGGGAAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mdo-Let-7-P1d_5p |
mirBase accession | MIMAT0004141 |
Sequence |
0- UGAGGUAGUAGGUUGUAUAGUU -22
Get sequence
|
Proposed targets |
TargetScanVert: mdo-let-7a-5p
|
Star sequence |
Mdo-Let-7-P1d_3p* |
mirBase accession | MIMAT0026686 |
Sequence |
45- CUGUACAGCCUCCUAGCUUUCC -67
Get sequence
|
Proposed targets |
TargetScanVert: mdo-let-7a-3p
|