MirGeneDB 3.0
MirGeneDB ID

Lch-Let-7-P1d

Family name LET-7 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Let-7-P1b  Lch-Let-7-P1c  Lch-Let-7-P2a1  Lch-Let-7-P2a2  Lch-Let-7-P2a3  Lch-Let-7-P2a4  Lch-Let-7-P2b1  Lch-Let-7-P2b2  Lch-Let-7-P2b4  Lch-Let-7-P2c1  Lch-Let-7-P2c2  Lch-Let-7-P2c3  Lch-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P1d  Aga-Let-7  Agr-Let-7  Ami-Let-7-P1d  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P1d  Cfa-Let-7-P1d  Cin-Let-7-P1  Cja-Let-7-P1d  Cli-Let-7-P1d  Cmi-Let-7-P1d  Cpi-Let-7-P1d  Cpo-Let-7-P1d  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1d  Dpu-Let-7  Dre-Let-7-P1d1  Dre-Let-7-P1d2  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P1d  Egr-Let-7  Esc-Let-7  Ete-Let-7-P1d  Gga-Let-7-P1d  Gja-Let-7-P1d  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P1d  Isc-Let-7  Laf-Let-7-P1d  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P1d  Mal-Let-7-P1d1  Mal-Let-7-P1d2  Mdo-Let-7-P1d  Mgi-Let-7  Mml-Let-7-P1d  Mmr-Let-7-P1d  Mmu-Let-7-P1d  Mom-Let-7  Mun-Let-7-P1d  Neu-Let-7-P1d  Npo-Let-7  Oan-Let-7-P1d  Obi-Let-7  Ocu-Let-7-P1d  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P1d  Pau-Let-7  Pbv-Let-7-P1d  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P1d  Rph-Let-7  Sha-Let-7-P1d  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P1d  Spu-Let-7  Sro-Let-7  Sto-Let-7-P1d  Tca-Let-7  Tgu-Let-7-P1d  Tni-Let-7-P1d1  Tni-Let-7-P1d2  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH126571.1: 5788957-5789023 [+] Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1d)		 Mir-10-P2d JH126571.1: 5782632-5782688 [+] Ensembl
Let-7-P1d JH126571.1: 5788957-5789023 [+] Ensembl
Mir-10-P3d JH126571.1: 5812183-5812244 [+] Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
CCCAGUGUGUUCGAUUGCAUGUGUCCAGGCUGAGGUAGUAGGUUGUAUAGUUUAGAAUUACACCAAGGGAGAUAACUGUACAACCUCCUAGCUUUCCCUGGGUCAUGCACAAGACGACGAGAUAGAA
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Structure
        10           20        30        40        50        60   
CCCAGUGUGUUCGAUUG---|   UGU     CU   G   U             UAGAAUUACA 
                    CAUG   CCAGG  GAG UAG AGGUUGUAUAGUU          \
                    GUAC   GGUCC  UUC AUC UCCAACAUGUCAA          C
AAGAUAGAGCAGCAGAACAC^   UG-     CU   G   C             UAGAGGGAAC 
     120       110        100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Let-7-P1d_5p (predicted)
mirBase accessionNone
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Lch-Let-7-P1d_3p* (predicted)
mirBase accessionNone
Sequence 
45- CUGUACAACCUCCUAGCUUUCC -67
Get sequence