MirGeneDB 2.1

MirGeneDB ID

Lch-Let-7-P2a3

Family name LET-7 (all species)
Seed GAGGUAG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Let-7-P1b  Lch-Let-7-P1c  Lch-Let-7-P1d  Lch-Let-7-P2a1  Lch-Let-7-P2a2  Lch-Let-7-P2a4  Lch-Let-7-P2b1  Lch-Let-7-P2b2  Lch-Let-7-P2b4  Lch-Let-7-P2c1  Lch-Let-7-P2c2  Lch-Let-7-P2c3  Lch-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2a3  Ami-Let-7-P2a3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a3  Cfa-Let-7-P2a3  Cgi-Let-7  Cpi-Let-7-P2a3  Cpo-Let-7-P2a3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a3  Dpu-Let-7  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a3  Gja-Let-7-P2a3  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Hme-Let-7  Hsa-Let-7-P2a3  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Loc-Let-7-P2a3  Mal-Let-7-P2a3a  Mal-Let-7-P2a3b  Mdo-Let-7-P2a3  Mml-Let-7-P2a3  Mmu-Let-7-P2a3  Mun-Let-7-P2a3  Npo-Let-7  Oan-Let-7-P2a3  Obi-Let-7  Ocu-Let-7-P2a3  Ovu-Let-7  Pbv-Let-7-P2a3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a3  Sha-Let-7-P2a3  Sko-Let-7  Spt-Let-7-P2a3  Spu-Let-7  Sto-Let-7-P2a3  Tca-Let-7  Tgu-Let-7-P2a3  Tni-Let-7-P2a3a  Tni-Let-7-P2a3b  Xbo-Let-7  Xla-Let-7-P2a3d  Xtr-Let-7-P2a3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)
JH126938.1: 650371-650441 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAGACUGGAAAAUUGGUGCCCUUCGGGUUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCACACCCGAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCUGCAGUGGCAGCCCAGCAUCAGAGAGCUG
Get precursor sequence
Structure
        10         20         30        40        50        60     
UUGAGACUGGAAAAUUGG-    -| U    UU   GU                UUAGGGUCACAC 
                   UGCC CU CGGG  GAG  AGUAGAUUGUAUAGUU            C
                   ACGG GA GUCC  UUC  UCAUCUGACAUAUCAA            C
GUCGAGAGACUACGACCCG    U^ C    U-   UG                UAGAGGUUCUAG 
 .       120       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Let-7-P2a3_5p (predicted)

mirBase accessionNone
Sequence
0- UGAGGUAGUAGAUUGUAUAGUU -22
Get sequence
Star sequence

Lch-Let-7-P2a3_3p* (predicted)

mirBase accessionNone
Sequence
50- CUAUACAGUCUACUGUCUUUC -71
Get sequence