Let-7-P2a3

MirGeneDB ID

Cja-Let-7-P2a3

Family name

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Let-7-P1b Cja-Let-7-P1c Cja-Let-7-P1d Cja-Let-7-P2a1 Cja-Let-7-P2a2 Cja-Let-7-P2b1 Cja-Let-7-P2b2 Cja-Let-7-P2b3 Cja-Let-7-P2c1 Cja-Let-7-P2c2 Cja-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a3 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a3 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a3 Cfa-Let-7-P2a3 Cpi-Let-7-P2a3 Cpo-Let-7-P2a3 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a3 Dpu-Let-7 Dre-Let-7-P2a3a Dre-Let-7-P2a3b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a3 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a3 Gja-Let-7-P2a3 Gmo-Let-7-P2a3a Gmo-Let-7-P2a3b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a3 Isc-Let-7 Laf-Let-7-P2a3 Lan-Let-7 Lch-Let-7-P2a3 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a3 Mal-Let-7-P2a3a Mal-Let-7-P2a3b Mdo-Let-7-P2a3 Mgi-Let-7 Mml-Let-7-P2a3 Mmr-Let-7-P2a3 Mmu-Let-7-P2a3 Mom-Let-7 Mun-Let-7-P2a3 Neu-Let-7-P2a3 Npo-Let-7 Oan-Let-7-P2a3 Obi-Let-7 Ocu-Let-7-P2a3 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a3 Pau-Let-7 Pbv-Let-7-P2a3 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a3 Rph-Let-7 Sha-Let-7-P2a3 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a3 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a3 Tca-Let-7 Tgu-Let-7-P2a3 Tni-Let-7-P2a3a Tni-Let-7-P2a3b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a3d Xtr-Let-7-P2a3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021937.1: 52170874-52170944 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a3)

Let-7-P2b3 CM021937.1: 52169914-52169992 [-] UCSC Ensembl
Let-7-P2a3 CM021937.1: 52170874-52170944 [-] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

GCUGAAGAUGGACACUGGUGCUCUGUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCACGGUGAUACACGUCUUCUCCGACUGGC

Get precursor sequence

Structure

        10         20         30        40        50        60     
GCUGAAGAUGGACACUG-   CU-|       U   GU                UUAGGGUCAUAC 
                  GUG   CUGUGGGA GAG  AGUAGAUUGUAUAGUU            C
                  CAU   GGCACCCU UUC  UCAUCUGACAUAUCAA            C
CGGUCAGCCUCUUCUGCA   AGU^       -   UG                UAGAGGUUCUAC 
 .       120       110       100         90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cja-Let-7-P2a3_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGAUUGUAUAGUU -22

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Star sequence

Cja-Let-7-P2a3_3p*

mirBase accession

None

Sequence

50- CUAUACAGUCUACUGUCUUUC -71

Get sequence