Let-7-P2a3

MirGeneDB ID

Eca-Let-7-P2a3

Family name

Species

MiRBase ID

Paralogues

Eca-Let-7-P1b Eca-Let-7-P1c Eca-Let-7-P1d Eca-Let-7-P2a1 Eca-Let-7-P2a2 Eca-Let-7-P2b1 Eca-Let-7-P2b2 Eca-Let-7-P2b3 Eca-Let-7-P2c1 Eca-Let-7-P2c2 Eca-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2a3 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a3 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a3 Cfa-Let-7-P2a3 Cja-Let-7-P2a3 Cpi-Let-7-P2a3 Cpo-Let-7-P2a3 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a3 Dpu-Let-7 Dre-Let-7-P2a3a Dre-Let-7-P2a3b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a3 Gja-Let-7-P2a3 Gmo-Let-7-P2a3a Gmo-Let-7-P2a3b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a3 Isc-Let-7 Laf-Let-7-P2a3 Lan-Let-7 Lch-Let-7-P2a3 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a3 Mal-Let-7-P2a3a Mal-Let-7-P2a3b Mdo-Let-7-P2a3 Mgi-Let-7 Mml-Let-7-P2a3 Mmr-Let-7-P2a3 Mmu-Let-7-P2a3 Mom-Let-7 Mun-Let-7-P2a3 Neu-Let-7-P2a3 Npo-Let-7 Oan-Let-7-P2a3 Obi-Let-7 Ocu-Let-7-P2a3 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a3 Pau-Let-7 Pbv-Let-7-P2a3 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a3 Rph-Let-7 Sha-Let-7-P2a3 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a3 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a3 Tca-Let-7 Tgu-Let-7-P2a3 Tni-Let-7-P2a3a Tni-Let-7-P2a3b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a3d Xtr-Let-7-P2a3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 44905230-44905300 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a3)

Let-7-P2a3 CM009179.1: 44905230-44905300 [+] UCSC Ensembl
Let-7-P2b3 CM009179.1: 44906099-44906177 [+] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

GCUGAAGAUGAACACUGGUGCUCUGUGGGAUGAGGUAGUAGAUUGUAUAGUUUUAGGGUCAUACCCCAUCUUGGAGAUAACUAUACAGUCUACUGUCUUUCCCACGGUGGUACACUUCCCCUCCGACAUGC

Get precursor sequence

Structure

        10         20         30        40        50        60     
GCUGAAGAUGAACACUG-     -|       U   GU                UUAGGGUCAUAC 
                  GUGCU CUGUGGGA GAG  AGUAGAUUGUAUAGUU            C
                  CAUGG GGCACCCU UUC  UCAUCUGACAUAUCAA            C
CGUACAGCCUCCCCUUCA     U^       -   UG                UAGAGGUUCUAC 
 .       120       110       100         90        80        70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Let-7-P2a3_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGAUUGUAUAGUU -22

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Star sequence

Eca-Let-7-P2a3_3p*

mirBase accession

None

Sequence

50- CUAUACAGUCUACUGUCUUUC -71

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