Let-7-P2a3d

MirGeneDB ID

Xla-Let-7-P2a3d

Family name

LET-7 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-let-7f

Paralogues

Xla-Let-7-P1b3 Xla-Let-7-P1b4 Xla-Let-7-P1c3 Xla-Let-7-P1c4 Xla-Let-7-P2a1c Xla-Let-7-P2a1d Xla-Let-7-P2a2c Xla-Let-7-P2a2d Xla-Let-7-P2b2c Xla-Let-7-P2b2d Xla-Let-7-P2b3c Xla-Let-7-P2b3d Xla-Let-7-P2c2 Xla-Let-7-P2c3c Xla-Let-7-P2c3d Xla-Let-7-P2c4

Orthologues

Aae-Let-7 Aca-Let-7-P2a3 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a3 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a3 Cfa-Let-7-P2a3 Cja-Let-7-P2a3 Cpi-Let-7-P2a3 Cpo-Let-7-P2a3 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a3 Dpu-Let-7 Dre-Let-7-P2a3a Dre-Let-7-P2a3b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a3 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a3 Gja-Let-7-P2a3 Gmo-Let-7-P2a3a Gmo-Let-7-P2a3b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a3 Isc-Let-7 Laf-Let-7-P2a3 Lan-Let-7 Lch-Let-7-P2a3 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a3 Mal-Let-7-P2a3a Mal-Let-7-P2a3b Mdo-Let-7-P2a3 Mgi-Let-7 Mml-Let-7-P2a3 Mmr-Let-7-P2a3 Mmu-Let-7-P2a3 Mom-Let-7 Mun-Let-7-P2a3 Neu-Let-7-P2a3 Npo-Let-7 Oan-Let-7-P2a3 Obi-Let-7 Ocu-Let-7-P2a3 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a3 Pau-Let-7 Pbv-Let-7-P2a3 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a3 Rph-Let-7 Sha-Let-7-P2a3 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a3 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a3 Tca-Let-7 Tgu-Let-7-P2a3 Tni-Let-7-P2a3a Tni-Let-7-P2a3b Tur-Let-7 War-Let-7 Xbo-Let-7 Xtr-Let-7-P2a3

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030739.1: 36826128-36826198 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2a3d)

Let-7-P2b3d NC_030739.1: 36825865-36825942 [-] UCSC Ensembl
Let-7-P2a3d NC_030739.1: 36826128-36826198 [-] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

CAUGUGUUCAGAGAUUGUGACGCUGCCGGAUGAGGUAGUAGAUUGUAUAGUUUUGGGGUCACACCCGAUCUGGGAGAUAACUAUACAGUUUACUGUCUUUCCUGCGGAGUUUCCAGCCUGCAAAUCCAUAA

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Structure

        10          20        30        40        50        60     
CAUGUGUUCAGAGAUUGU--|  G    C   U   GU                UUGGGGUCACAC 
                    GAC CUGC GGA GAG  AGUAGAUUGUAUAGUU            C
                    UUG GGCG CCU UUC  UCAUUUGACAUAUCAA            C
AAUACCUAAACGUCCGACCU^  A    U   -   UG                UAGAGGGUCUAG 
 .       120       110       100         90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Let-7-P2a3d_5p

mirBase accession

MIMAT0046403

Sequence

0- UGAGGUAGUAGAUUGUAUAGUU -22

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Star sequence

Xla-Let-7-P2a3d_3p* (predicted)

mirBase accession

MIMAT0046404

Sequence

50- CUAUACAGUUUACUGUCUUUC -71

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