Let-7-P2c3c

MirGeneDB ID

Xla-Let-7-P2c3c

Family name

Species

MiRBase ID

Paralogues

Xla-Let-7-P1b3 Xla-Let-7-P1b4 Xla-Let-7-P1c3 Xla-Let-7-P1c4 Xla-Let-7-P2a1c Xla-Let-7-P2a1d Xla-Let-7-P2a2c Xla-Let-7-P2a2d Xla-Let-7-P2a3d Xla-Let-7-P2b2c Xla-Let-7-P2b2d Xla-Let-7-P2b3c Xla-Let-7-P2b3d Xla-Let-7-P2c2 Xla-Let-7-P2c3d Xla-Let-7-P2c4

Orthologues

Aae-Let-7 Aca-Let-7-P2c3 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2c3 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2c3 Cfa-Let-7-P2c3 Cja-Let-7-P2c3 Cli-Let-7-P2c3 Cmi-Let-7-P2c3 Cpi-Let-7-P2c3 Cpo-Let-7-P2c3 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2c3 Dpu-Let-7 Dre-Let-7-P2c3 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2c3 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2c3 Gga-Let-7-P2c3 Gja-Let-7-P2c3 Gmo-Let-7-P2c3 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2c3 Isc-Let-7 Laf-Let-7-P2c3 Lan-Let-7 Lch-Let-7-P2c3 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2c3 Mal-Let-7-P2c3 Mdo-Let-7-P2c3 Mgi-Let-7 Mml-Let-7-P2c3 Mmr-Let-7-P2c3 Mmu-Let-7-P2c3 Mom-Let-7 Mun-Let-7-P2c3 Npo-Let-7 Oan-Let-7-P2c3 Obi-Let-7 Ocu-Let-7-P2c3 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2c3 Pau-Let-7 Pbv-Let-7-P2c3 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2c3 Rph-Let-7 Sha-Let-7-P2c3 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2c3 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2c3 Tca-Let-7 Tgu-Let-7-P2c3 Tni-Let-7-P2c3 Tur-Let-7 War-Let-7 Xbo-Let-7 Xtr-Let-7-P2c3

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030730.1: 122075909-122075986 [+] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

UUACAUCAGAGAGACUGCUUGGAUUUGGGCUGAGGUAGUUGUUUGUACAGUUUAAGGGUCUGUGACACCACCCUCUAUUGGAGAUAACUGUACAGGCCACUGCCUUGCCUAGGACAGAGCAAACUCGCCAAGGAAUCC

Get precursor sequence

Structure

        10          20        30        40        50        60         
UUACAUCAGAGAGACUG--|  GGA       U        U            UAAGGGUCUGUGACAC 
                   CUU   UUUGGGC GAGGUAGU GUUUGUACAGUU                \
                   GAG   GGAUCCG UUCCGUCA CGGACAUGUCAA                C
CCUAAGGAACCGCUCAAAC^  ACA       -        C            UAGAGGUUAUCUCCCA 
      130       120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Let-7-P2c3c_5p

mirBase accession

None

Sequence

0- UGAGGUAGUUGUUUGUACAGUU -22

Get sequence

Star sequence

Xla-Let-7-P2c3c_3p*

mirBase accession

None

Sequence

57- CUGUACAGGCCACUGCCUUGC -78

Get sequence