Let-7-P2c3

MirGeneDB ID

Cfa-Let-7-P2c3

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-let-7g

Paralogues

Cfa-Let-7-P1b Cfa-Let-7-P1c Cfa-Let-7-P1d Cfa-Let-7-P2a1 Cfa-Let-7-P2a2 Cfa-Let-7-P2a3 Cfa-Let-7-P2b1 Cfa-Let-7-P2b2 Cfa-Let-7-P2b3 Cfa-Let-7-P2c1 Cfa-Let-7-P2c2

Orthologues

Aae-Let-7 Aca-Let-7-P2c3 Ami-Let-7-P2c3 Bge-Let-7 Bpl-Let-7 Bta-Let-7-P2c3 Cgi-Let-7 Cli-Let-7-P2c3 Cmi-Let-7-P2c3 Cpi-Let-7-P2c3 Cpo-Let-7-P2c3 Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2c3 Dpu-Let-7 Dre-Let-7-P2c3 Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P2c3 Gga-Let-7-P2c3 Gja-Let-7-P2c3 Gmo-Let-7-P2c3 Hme-Let-7 Hsa-Let-7-P2c3 Isc-Let-7 Lan-Let-7 Lch-Let-7-P2c3 Lgi-Let-7 Loc-Let-7-P2c3 Mal-Let-7-P2c3 Mdo-Let-7-P2c3 Mml-Let-7-P2c3 Mmu-Let-7-P2c3 Mun-Let-7-P2c3 Npo-Let-7 Oan-Let-7-P2c3 Obi-Let-7 Ocu-Let-7-P2c3 Ovu-Let-7 Pbv-Let-7-P2c3 Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P2c3 Sha-Let-7-P2c3 Sko-Let-7 Spt-Let-7-P2c3 Spu-Let-7 Sto-Let-7-P2c3 Tca-Let-7 Tgu-Let-7-P2c3 Tni-Let-7-P2c3 Xbo-Let-7 Xla-Let-7-P2c3c Xla-Let-7-P2c3d Xtr-Let-7-P2c3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr20: 37501074-37501151 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P2c3)

Mir-135-P1 chr20: 37461833-37461892 [+] UCSC Ensembl
Let-7-P2c3 chr20: 37501074-37501151 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCUCCGUUUCCUUUUGCCUGAUUCCAGGCUGAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACCACCCGGUACAGGAGAUAACUGUACAGGCCACUGCCUUGCCAGGAACAGUGCACCAGCUACUGAGUGGGG

Get precursor sequence

Structure

        10           20        30        40        50        60         
CGCUCCGUUUCCUUUUGC---|  A    A   U        A            UGAGGGUCUAUGAUAC 
                     CUG UUCC GGC GAGGUAGU GUUUGUACAGUU                \
                     GAC AAGG CCG UUCCGUCA CGGACAUGUCAA                C
GGGGUGAGUCAUCGACCACGU^  -    A   -        C            UAGAGGACAUGGCCCA 
      130       120        110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Let-7-P2c3_5p

mirBase accession

MIMAT0006637

Sequence

0- UGAGGUAGUAGUUUGUACAGUU -22

Get sequence

Proposed targets

TargetScanVert: cfa-let-7g
miRDB: MIMAT0006637

Star sequence

Cfa-Let-7-P2c3_3p*

mirBase accession

None

Sequence

57- CUGUACAGGCCACUGCCUUGC -78

Get sequence