MirGeneDB ID | Xla-Let-7-P2c4 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
xla-let-7b
|
Paralogues |
Xla-Let-7-P1b3
Xla-Let-7-P1b4
Xla-Let-7-P1c3
Xla-Let-7-P1c4
Xla-Let-7-P2a1c
Xla-Let-7-P2a1d
Xla-Let-7-P2a2c
Xla-Let-7-P2a2d
Xla-Let-7-P2a3d
Xla-Let-7-P2b2c
Xla-Let-7-P2b2d
Xla-Let-7-P2b3c
Xla-Let-7-P2b3d
Xla-Let-7-P2c2
Xla-Let-7-P2c3c
Xla-Let-7-P2c3d
|
Orthologues |
Aae-Let-7
Bge-Let-7
Bpl-Let-7
Cgi-Let-7
Cmi-Let-7-P2c4
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Hme-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2c4
Lgi-Let-7
Mun-Let-7-P2c4
Npo-Let-7
Obi-Let-7
Ovu-Let-7
Pfl-Let-7
Pmi-Let-7
Sko-Let-7
Spu-Let-7
Tca-Let-7
Xbo-Let-7
Xtr-Let-7-P2c4
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030726.1: 71792735-71792808 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUCAGCCAGAUCUUGCCCAGCUCUCUGACUGAGGUAGUAGUUUGUGUAGUUAGGGGGCAGUGGUGUUUGCCCAUGGAGAUAACUAGACAAACUACUGCCUUGCCAGCGGUGGGCACAUUCGUCAGCAGUACUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUCAGCCAGAUCUUGCCCA U A ---| G AGGGGGCAGUGGUG
GCUC CUG CUG AGGUAGUAGUUUGU UAGUU \
CGGG GGC GAC UCCGUCAUCAAACA AUCAA U
UUCAUGACGACUGCUUACA- U - CGU^ G UAGAGGUACCCGUU
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Let-7-P2c4_5p |
mirBase accession | MIMAT0046397 |
Sequence |
0- UGAGGUAGUAGUUUGUGUAGUU -22
Get sequence
|
Star sequence |
Xla-Let-7-P2c4_3p* |
mirBase accession | MIMAT0046398 |
Sequence |
53- CUAGACAAACUACUGCCUUGC -74
Get sequence
|