MirGeneDB 3.0
MirGeneDB ID

Tni-Let-7-P2a3a

Family name LET-7 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-let-7g
Paralogues Tni-Let-7-P1b1  Tni-Let-7-P1b2  Tni-Let-7-P1d1  Tni-Let-7-P1d2  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Tni-Let-7-P2a3b  Tni-Let-7-P2a4a  Tni-Let-7-P2a4b  Tni-Let-7-P2b2a  Tni-Let-7-P2b2b  Tni-Let-7-P2b3a  Tni-Let-7-P2b3b  Tni-Let-7-P2b4a  Tni-Let-7-P2b4b  Tni-Let-7-P2c2a  Tni-Let-7-P2c2b  Tni-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a3  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2a3  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2a3  Cfa-Let-7-P2a3  Cja-Let-7-P2a3  Cpi-Let-7-P2a3  Cpo-Let-7-P2a3  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a3  Dpu-Let-7  Dre-Let-7-P2a3a  Dre-Let-7-P2a3b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2a3  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2a3  Gja-Let-7-P2a3  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2a3  Isc-Let-7  Laf-Let-7-P2a3  Lan-Let-7  Lch-Let-7-P2a3  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2a3  Mal-Let-7-P2a3a  Mal-Let-7-P2a3b  Mdo-Let-7-P2a3  Mgi-Let-7  Mml-Let-7-P2a3  Mmr-Let-7-P2a3  Mmu-Let-7-P2a3  Mom-Let-7  Mun-Let-7-P2a3  Neu-Let-7-P2a3  Npo-Let-7  Oan-Let-7-P2a3  Obi-Let-7  Ocu-Let-7-P2a3  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2a3  Pau-Let-7  Pbv-Let-7-P2a3  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2a3  Rph-Let-7  Sha-Let-7-P2a3  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2a3  Spu-Let-7  Sro-Let-7  Sto-Let-7-P2a3  Tca-Let-7  Tgu-Let-7-P2a3  Tur-Let-7  War-Let-7  Xbo-Let-7  Xla-Let-7-P2a3d  Xtr-Let-7-P2a3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 3596162-3596232 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a3a)		 Let-7-P2a3a 9: 3596162-3596232 [+] UCSC Ensembl
Let-7-P2b3a 9: 3596439-3596519 [+] UCSC Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
UACCAACAACCAGCAGAGCUUGCUGUGGGAUGAGGUAGUAGUUUGUAUAGUUUUAGGAUCACACCAGAUCUGGGAGAUAACUAUACAGUCUACUGUCUUUCCCAUGGUUAUGCCAUACCAGCUCAACAUGG
Get precursor sequence
Structure
        10         20         30        40        50        60     
UACCAACAACCAGCAGA-  UU-|        U   GU     U          UUAGGAUCACAC 
                  GC   GCUGUGGGA GAG  AGUAG UUGUAUAGUU            C
                  CG   UGGUACCCU UUC  UCAUC GACAUAUCAA            A
GGUACAACUCGACCAUAC  UAU^        -   UG     U          UAGAGGGUCUAG 
 .       120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Mature sequence

Tni-Let-7-P2a3a_5p
mirBase accessionMIMAT0003098
Sequence 
0- UGAGGUAGUAGUUUGUAUAGUU -22
Get sequence
Star sequence

Tni-Let-7-P2a3a_3p*
mirBase accessionNone
Sequence 
50- CUAUACAGUCUACUGUCUUUC -71
Get sequence