MirGeneDB 2.1
MirGeneDB ID

Tni-Let-7-P2b3b

Family name LET-7 (all species)
Seed GAGGUAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Let-7-P1b1  Tni-Let-7-P1b2  Tni-Let-7-P1d1  Tni-Let-7-P1d2  Tni-Let-7-P2a2a  Tni-Let-7-P2a2b  Tni-Let-7-P2a3a  Tni-Let-7-P2a3b  Tni-Let-7-P2a4a  Tni-Let-7-P2a4b  Tni-Let-7-P2b2a  Tni-Let-7-P2b2b  Tni-Let-7-P2b3a  Tni-Let-7-P2b4a  Tni-Let-7-P2b4b  Tni-Let-7-P2c2a  Tni-Let-7-P2c2b  Tni-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b3  Ami-Let-7-P2b3  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2b3  Cfa-Let-7-P2b3  Cgi-Let-7  Cpi-Let-7-P2b3  Cpo-Let-7-P2b3  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b3  Dpu-Let-7  Dre-Let-7-P2b3a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2b3  Gja-Let-7-P2b3  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Hme-Let-7  Hsa-Let-7-P2b3  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Loc-Let-7-P2b3  Mal-Let-7-P2b3a  Mml-Let-7-P2b3  Mmu-Let-7-P2b3  Mun-Let-7-P2b3  Npo-Let-7  Oan-Let-7-P2b3  Obi-Let-7  Ocu-Let-7-P2b3  Ovu-Let-7  Pbv-Let-7-P2b3  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2b3  Sko-Let-7  Spt-Let-7-P2b3  Spu-Let-7  Sto-Let-7-P2b3  Tca-Let-7  Xbo-Let-7  Xla-Let-7-P2b3c  Xla-Let-7-P2b3d  Xtr-Let-7-P2b3 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 10380397-10380479 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGCUGUUGUGUGACUGGCUGCGCUGUGCUGAGGUAGUAAGUUGUGUUGUUGUGGGGGUGGGAUACUACAGCCCCUCAACUGGAGAUACAACGAUACAACUUACUGCCUUCCACAACCCAAGGCACAAGACACAACACACAC
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Structure
        10        20          30        40        50        60        70 
GGGGCUGUUGUGUGACUG   GCGC--|   CU                     GUGGGGGUGGGAUACUAC 
                  GCU      UGUG  GAGGUAGUAAGUUGUGUUGUU                  A
                  CGG      ACAC  UUCCGUCAUUCAACAUAGCAA                  G
CACACACAACACAGAACA   AACCCA^   C-                     CAUAGAGGUCAACUCCCC 
 140       130       120        110       100        90        80
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Let-7-P2b3b_5p
mirBase accessionNone
Sequence 
0- UGAGGUAGUAAGUUGUGUUGUU -22
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Star sequence

Tni-Let-7-P2b3b_3p*
mirBase accessionNone
Sequence 
62- CGAUACAACUUACUGCCUUCC -83
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