MirGeneDB ID | Ami-Let-7-P2b3 |
Family name |
LET-7 (all species) |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-98
|
Paralogues |
Ami-Let-7-P1b
Ami-Let-7-P1c
Ami-Let-7-P1d
Ami-Let-7-P2a1
Ami-Let-7-P2a2
Ami-Let-7-P2a3
Ami-Let-7-P2a4
Ami-Let-7-P2b1
Ami-Let-7-P2b2
Ami-Let-7-P2b4
Ami-Let-7-P2c1
Ami-Let-7-P2c2
Ami-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b3
Aga-Let-7
Agr-Let-7
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P2b3
Cfa-Let-7-P2b3
Cja-Let-7-P2b3
Cpi-Let-7-P2b3
Cpo-Let-7-P2b3
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2b3
Dpu-Let-7
Dre-Let-7-P2b3a
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P2b3
Egr-Let-7
Esc-Let-7
Ete-Let-7-P2b3
Gja-Let-7-P2b3
Gmo-Let-7-P2b3a
Gmo-Let-7-P2b3b
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P2b3
Isc-Let-7
Laf-Let-7-P2b3
Lan-Let-7
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P2b3
Mal-Let-7-P2b3a
Mgi-Let-7
Mml-Let-7-P2b3
Mmr-Let-7-P2b3
Mmu-Let-7-P2b3
Mom-Let-7
Mun-Let-7-P2b3
Npo-Let-7
Oan-Let-7-P2b3
Obi-Let-7
Ocu-Let-7-P2b3
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P2b3
Pau-Let-7
Pbv-Let-7-P2b3
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P2b3
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P2b3
Spu-Let-7
Sro-Let-7
Sto-Let-7-P2b3
Tca-Let-7
Tni-Let-7-P2b3a
Tni-Let-7-P2b3b
Tur-Let-7
War-Let-7
Xbo-Let-7
Xla-Let-7-P2b3c
Xla-Let-7-P2b3d
Xtr-Let-7-P2b3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017708984.1: 7587-7664 [-]
UCSC
|
Clustered miRNAs (< 50kb from Let-7-P2b3) |
Let-7-P2b3
NW_017708984.1: 7587-7664 [-]
UCSC
Let-7-P2a3
NW_017708984.1: 8044-8111 [-]
UCSC
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
UACCUGGGUUCCUUGCUGCCAGCACUAGGGUGAGGUAGUAAGUUGUAUCGUUGGGGGGUCGGGAUUGGAGCCCCGGUGUCGAGGUAACUAUACAACUUACUACUUUCCCUGGUGCUGGCCCUUACUGCAGGGAGCAGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UACCUGGGUUCCUUGCU--| U C GGGGGGUCGGGAUUGG
GCCAGCACUAGGG GAGGUAGUAAGUUGUAU GUU \
CGGUCGUGGUCCC UUUCAUCAUUCAACAUA CAA A
GGACGAGGGACGUCAUUCC^ - U UGGAGCUGUGGCCCCG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ami-Let-7-P2b3_5p |
mirBase accession | MIMAT0038108 |
Sequence |
0- UGAGGUAGUAAGUUGUAUCGUU -22
Get sequence
|
Star sequence |
Ami-Let-7-P2b3_3p* |
mirBase accession | MIMAT0038109 |
Sequence |
57- CUAUACAACUUACUACUUUCC -78
Get sequence
|