MirGeneDB 3.0
MirGeneDB ID

Lch-Let-7-P2a4

Family name LET-7 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Let-7-P1b  Lch-Let-7-P1c  Lch-Let-7-P1d  Lch-Let-7-P2a1  Lch-Let-7-P2a2  Lch-Let-7-P2a3  Lch-Let-7-P2b1  Lch-Let-7-P2b2  Lch-Let-7-P2b4  Lch-Let-7-P2c1  Lch-Let-7-P2c2  Lch-Let-7-P2c3  Lch-Let-7-P2c4 
Orthologues Aae-Let-7  Aca-Let-7-P2a4  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2a4  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Cli-Let-7-P2a4  Cmi-Let-7-P2a4  Cpi-Let-7-P2a4  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dre-Let-7-P2a4a  Dre-Let-7-P2a4b  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Egr-Let-7  Esc-Let-7  Gga-Let-7-P2a4  Gja-Let-7-P2a4  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2a4  Mal-Let-7-P2a4a  Mal-Let-7-P2a4b  Mgi-Let-7  Mom-Let-7  Mun-Let-7-P2a4  Npo-Let-7  Oan-Let-7-P2a4  Obi-Let-7  Ofu-Let-7  Ovu-Let-7  Pau-Let-7  Pbv-Let-7-P2a4  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rph-Let-7  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2a4  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tgu-Let-7-P2a4  Tni-Let-7-P2a4a  Tni-Let-7-P2a4b  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH126819.1: 499283-499354 [+] Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a4)		 Let-7-P2a4 JH126819.1: 499283-499354 [+] Ensembl
Let-7-P2b4 JH126819.1: 500448-500525 [+] Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
ACUGCUGUUGGUGAUCACUGUACCUGGGGCUGAGGUAGUAGAUUGAAUAGUUGUGAGGCUCCUGCUCUCCCUUUGAGAUAACUAUACAAUCUACUGUCUUUCCAAAGGAGACAGAUUUUUCCUCACUGAAGA
Get precursor sequence
Structure
        10         20         30        40        50        60      
ACUGCUGUUGGUGAUCA-    A-|  GG  CU   GU         A      GUGAGGCUCCUGC 
                  CUGU  CCU  GG  GAG  AGUAGAUUG AUAGUU             \
                  GACA  GGA  CC  UUC  UCAUCUAAC UAUCAA             U
AGAAGUCACUCCUUUUUA    GA^  AA  U-   UG         A      UAGAGUUUCCCUC 
130       120       110        100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Lch-Let-7-P2a4_5p (predicted)
mirBase accessionNone
Sequence 
0- UGAGGUAGUAGAUUGAAUAGUU -22
Get sequence
Star sequence

Lch-Let-7-P2a4_3p* (predicted)
mirBase accessionNone
Sequence 
51- CUAUACAAUCUACUGUCUUUC -72
Get sequence