MirGeneDB ID | Gja-Let-7-P2a4 |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Let-7-P1b
Gja-Let-7-P1c
Gja-Let-7-P1d
Gja-Let-7-P2a1
Gja-Let-7-P2a2
Gja-Let-7-P2a3
Gja-Let-7-P2b1
Gja-Let-7-P2b2
Gja-Let-7-P2b3
Gja-Let-7-P2b4
Gja-Let-7-P2c1
Gja-Let-7-P2c2
Gja-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2a4
Ami-Let-7-P2a4
Bge-Let-7
Bpl-Let-7
Cgi-Let-7
Cli-Let-7-P2a4
Cmi-Let-7-P2a4
Cpi-Let-7-P2a4
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dre-Let-7-P2a4a
Dre-Let-7-P2a4b
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Gga-Let-7-P2a4
Gmo-Let-7-P2a4a
Gmo-Let-7-P2a4b
Hme-Let-7
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2a4
Lgi-Let-7
Loc-Let-7-P2a4
Mal-Let-7-P2a4a
Mal-Let-7-P2a4b
Mun-Let-7-P2a4
Npo-Let-7
Oan-Let-7-P2a4
Obi-Let-7
Ovu-Let-7
Pbv-Let-7-P2a4
Pfl-Let-7
Pmi-Let-7
Sko-Let-7
Spt-Let-7-P2a4
Spu-Let-7
Tca-Let-7
Tgu-Let-7-P2a4
Tni-Let-7-P2a4a
Tni-Let-7-P2a4b
Xbo-Let-7
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015171521.1: 414730-414800 [-]
|
Precursor (pre-Mir +30nt flank) |
GCUUAGCACAAACAAUGCUGUCCUUGAGGCUGAGGUAGUAGAUUGAAUAGUUGUGGAGCCAUAUUCUCCCUCUGAGCUAACUAUACAAUCUACUGUCUUUCCUAAGGAGACAGUCAGGUCAUCUGUUCCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUUAGCACAAACAAUG- -| G CU GU A GUGGAGCCAUAU
CUGUC CUU AGG GAG AGUAGAUUG AUAGUU U
GACAG GGA UCC UUC UCAUCUAAC UAUCAA C
CUCCUUGUCUACUGGACU A^ A U- UG A UCGAGUCUCCCU
. 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Gja-Let-7-P2a4_5p |
mirBase accession | None |
Sequence |
0- UGAGGUAGUAGAUUGAAUAGUU -22
Get sequence
|
Star sequence |
Gja-Let-7-P2a4_3p* |
mirBase accession | None |
Sequence |
50- CUAUACAAUCUACUGUCUUUC -71
Get sequence
|