| MirGeneDB ID | Spt-Let-7-P2a4 |
|---|---|
| Family name | LET-7 (all species) |
| Seed | GAGGUAG |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Let-7-P1b Spt-Let-7-P1c Spt-Let-7-P1d Spt-Let-7-P2a1 Spt-Let-7-P2a2 Spt-Let-7-P2a3 Spt-Let-7-P2b1 Spt-Let-7-P2b2 Spt-Let-7-P2b3 Spt-Let-7-P2b4 Spt-Let-7-P2c1 Spt-Let-7-P2c2 Spt-Let-7-P2c3 |
| Orthologues | Aae-Let-7 Aca-Let-7-P2a4 Ami-Let-7-P2a4 Bge-Let-7 Bpl-Let-7 Cgi-Let-7 Cli-Let-7-P2a4 Cmi-Let-7-P2a4 Cpi-Let-7-P2a4 Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dre-Let-7-P2a4a Dre-Let-7-P2a4b Dsi-Let-7 Dya-Let-7 Esc-Let-7 Gga-Let-7-P2a4 Gja-Let-7-P2a4 Gmo-Let-7-P2a4a Gmo-Let-7-P2a4b Hme-Let-7 Isc-Let-7 Lan-Let-7 Lch-Let-7-P2a4 Lgi-Let-7 Loc-Let-7-P2a4 Mal-Let-7-P2a4a Mal-Let-7-P2a4b Mun-Let-7-P2a4 Npo-Let-7 Oan-Let-7-P2a4 Obi-Let-7 Ovu-Let-7 Pbv-Let-7-P2a4 Pfl-Let-7 Pmi-Let-7 Sko-Let-7 Spu-Let-7 Tca-Let-7 Tgu-Let-7-P2a4 Tni-Let-7-P2a4a Tni-Let-7-P2a4b Xbo-Let-7 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01007384.1: 657720-657790 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCUGUCCUGCCCCUAUGCUGUCCUUGAGGCUGAGGUAGUAGAUUGAAUAGUUGUGGAGUCCUACCCUCCCUCUGAGCUAACUAUACAAUCUACUGUCUUUCCUAAGGAGACAGUCAGGUCAUCUGCUUCAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCUGUCCUGCCCCUAUG- -| G CU GU A GUGGAGUCCUAC CUGUC CUU AGG GAG AGUAGAUUG AUAGUU C GACAG GGA UCC UUC UCAUCUAAC UAUCAA C GACUUCGUCUACUGGACU A^ A U- UG A UCGAGUCUCCCU . 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Spt-Let-7-P2a4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGAGGUAGUAGAUUGAAUAGUU -22
Get sequence
|
| Star sequence | Spt-Let-7-P2a4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
50- CUAUACAAUCUACUGUCUUUC -71
Get sequence
|
