Let-7-P1d1

MirGeneDB ID

Gmo-Let-7-P1d1

Family name

LET-7 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-let-7a-2

Paralogues

Gmo-Let-7-P1b1 Gmo-Let-7-P1b2 Gmo-Let-7-P1c2 Gmo-Let-7-P1d2 Gmo-Let-7-P2a1a Gmo-Let-7-P2a2a Gmo-Let-7-P2a3a Gmo-Let-7-P2a3b Gmo-Let-7-P2a4a Gmo-Let-7-P2a4b Gmo-Let-7-P2b1a Gmo-Let-7-P2b2a Gmo-Let-7-P2b3a Gmo-Let-7-P2b3b Gmo-Let-7-P2b4a Gmo-Let-7-P2b4b Gmo-Let-7-P2c2a Gmo-Let-7-P2c2b Gmo-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1d Aga-Let-7 Agr-Let-7 Ami-Let-7-P1d Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1d Cfa-Let-7-P1d Cin-Let-7-P1 Cja-Let-7-P1d Cli-Let-7-P1d Cmi-Let-7-P1d Cpi-Let-7-P1d Cpo-Let-7-P1d Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P1d Dpu-Let-7 Dre-Let-7-P1d1 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1d Egr-Let-7 Esc-Let-7 Ete-Let-7-P1d Gga-Let-7-P1d Gja-Let-7-P1d Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1d Isc-Let-7 Laf-Let-7-P1d Lan-Let-7 Lch-Let-7-P1d Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1d Mal-Let-7-P1d1 Mdo-Let-7-P1d Mgi-Let-7 Mml-Let-7-P1d Mmr-Let-7-P1d Mmu-Let-7-P1d Mom-Let-7 Mun-Let-7-P1d Neu-Let-7-P1d Npo-Let-7 Oan-Let-7-P1d Obi-Let-7 Ocu-Let-7-P1d Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1d Pau-Let-7 Pbv-Let-7-P1d Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1d Rph-Let-7 Sha-Let-7-P1d Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1d Spu-Let-7 Sro-Let-7 Sto-Let-7-P1d Tca-Let-7 Tgu-Let-7-P1d Tni-Let-7-P1d1 Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_1068: 125983-126049 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P1d1)

Let-7-P1d1 GeneScaffold_1068: 125983-126049 [+] UCSC Ensembl
Mir-10-P3d1 GeneScaffold_1068: 137441-137502 [+] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

CCCUCUCUCUACAGUUGCUUGCUCCCAGGUUGAGGUAGUAGGUUGUAUAGUUGAGGAUUGCACCAAAGGCGAUAACUGUACAACUUCCUAGCUUCCCCUGAGGUUUGCCCUUCCCAUCCAUGCUUAG

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Structure

        10        20           30        40        50        60   
CCCUCUCUCUACAGUUGCUU  U--  -|   UU   G   U             GAGGAUUGCA 
                    GC   CC CAGG  GAG UAG AGGUUGUAUAGUU          \
                    CG   GG GUCC  UUC AUC UUCAACAUGUCAA          C
GAUUCGUACCUACCCUUCC-  UUU  A^   CC   G   C             UAGCGGAAAC 
     120       110        100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Let-7-P1d1_5p

mirBase accession

MIMAT0044081

Sequence

0- UGAGGUAGUAGGUUGUAUAGUU -22

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Star sequence

Gmo-Let-7-P1d1_3p*

mirBase accession

None

Sequence

45- CUGUACAACUUCCUAGCUUCCC -67

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