MirGeneDB 2.1
MirGeneDB ID

Gmo-Let-7-P1d1

Family name LET-7 (all species)
Seed GAGGUAG
Species Cod (Gadus morhua)
MiRBase ID gmo-let-7a-2
Paralogues Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Gmo-Let-7-P1c2  Gmo-Let-7-P1d2  Gmo-Let-7-P2a1a  Gmo-Let-7-P2a2a  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gmo-Let-7-P2b1a  Gmo-Let-7-P2b2a  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b  Gmo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P1d  Ami-Let-7-P1d  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P1d  Cfa-Let-7-P1d  Cgi-Let-7  Cin-Let-7-P1  Cli-Let-7-P1d  Cmi-Let-7-P1d  Cpi-Let-7-P1d  Cpo-Let-7-P1d  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P1d  Dpu-Let-7  Dre-Let-7-P1d1  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P1d  Gga-Let-7-P1d  Gja-Let-7-P1d  Hme-Let-7  Hsa-Let-7-P1d  Isc-Let-7  Lan-Let-7  Lch-Let-7-P1d  Lgi-Let-7  Loc-Let-7-P1d  Mal-Let-7-P1d1  Mdo-Let-7-P1d  Mml-Let-7-P1d  Mmu-Let-7-P1d  Mun-Let-7-P1d  Npo-Let-7  Oan-Let-7-P1d  Obi-Let-7  Ocu-Let-7-P1d  Ovu-Let-7  Pbv-Let-7-P1d  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P1d  Sha-Let-7-P1d  Sko-Let-7  Spt-Let-7-P1d  Spu-Let-7  Sto-Let-7-P1d  Tca-Let-7  Tgu-Let-7-P1d  Tni-Let-7-P1d1  Xbo-Let-7 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1068: 125983-126049 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P1d1)		 Let-7-P1d1 GeneScaffold_1068: 125983-126049 [+] UCSC Ensembl
Mir-10-P3d1 GeneScaffold_1068: 137441-137502 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUCUCUCUACAGUUGCUUGCUCCCAGGUUGAGGUAGUAGGUUGUAUAGUUGAGGAUUGCACCAAAGGCGAUAACUGUACAACUUCCUAGCUUCCCCUGAGGUUUGCCCUUCCCAUCCAUGCUUAG
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Structure
        10        20           30        40        50        60   
CCCUCUCUCUACAGUUGCUU  U--  -|   UU   G   U             GAGGAUUGCA 
                    GC   CC CAGG  GAG UAG AGGUUGUAUAGUU          \
                    CG   GG GUCC  UUC AUC UUCAACAUGUCAA          C
GAUUCGUACCUACCCUUCC-  UUU  A^   CC   G   C             UAGCGGAAAC 
     120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Let-7-P1d1_5p
mirBase accessionMIMAT0044081
Sequence 
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Gmo-Let-7-P1d1_3p*
mirBase accessionNone
Sequence 
45- CUGUACAACUUCCUAGCUUCCC -67
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