MirGeneDB ID | Gmo-Let-7-P2b1a |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-let-7f
|
Paralogues |
Gmo-Let-7-P1b1
Gmo-Let-7-P1b2
Gmo-Let-7-P1c2
Gmo-Let-7-P1d1
Gmo-Let-7-P1d2
Gmo-Let-7-P2a1a
Gmo-Let-7-P2a2a
Gmo-Let-7-P2a3a
Gmo-Let-7-P2a3b
Gmo-Let-7-P2a4a
Gmo-Let-7-P2a4b
Gmo-Let-7-P2b2a
Gmo-Let-7-P2b3a
Gmo-Let-7-P2b3b
Gmo-Let-7-P2b4a
Gmo-Let-7-P2b4b
Gmo-Let-7-P2c2a
Gmo-Let-7-P2c2b
Gmo-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P2b1
Ami-Let-7-P2b1
Bge-Let-7
Bpl-Let-7
Bta-Let-7-P2b1
Cfa-Let-7-P2b1
Cgi-Let-7
Cli-Let-7-P2b1
Cpi-Let-7-P2b1
Cpo-Let-7-P2b1
Cte-Let-7
Dan-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P2b1
Dpu-Let-7
Dre-Let-7-P2b1a
Dsi-Let-7
Dya-Let-7
Esc-Let-7
Ete-Let-7-P2b1
Gga-Let-7-P2b1
Gja-Let-7-P2b1
Hme-Let-7
Hsa-Let-7-P2b1
Isc-Let-7
Lan-Let-7
Lch-Let-7-P2b1
Lgi-Let-7
Loc-Let-7-P2b1
Mal-Let-7-P2b1a
Mdo-Let-7-P2b1
Mml-Let-7-P2b1
Mmu-Let-7-P2b1
Mun-Let-7-P2b1
Npo-Let-7
Oan-Let-7-P2b1
Obi-Let-7
Ocu-Let-7-P2b1
Ovu-Let-7
Pbv-Let-7-P2b1
Pfl-Let-7
Pmi-Let-7
Rno-Let-7-P2b1
Sha-Let-7-P2b1
Sko-Let-7
Spt-Let-7-P2b1
Spu-Let-7
Tca-Let-7
Tgu-Let-7-P2b1
Xbo-Let-7
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_1801: 26456-26532 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCCCAGACGUCUUGAUUCGCUCAUUCAGUGUGAGGUAGUAGAUUGUAUAGUUUAAGGGUAGUGAUUUUACCCGUUUCAGAAGAUAACUAAACAGUCUACUGCCUUCCUUGAGGAGUGAUAUUGCUUCAGGUCUACUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCCCAGACGUCUUGAUU---| A UGU A UAAGGGUAGUGAUUU
CGCUC UUCAG GAGGUAGUAGAUUGU UAGUU U
GUGAG GAGUU UUCCGUCAUCUGACA AUCAA A
AUCAUCUGGACUUCGUUAUA^ - CC- A UAGAAGACUUUGCCC
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Although there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the conservation of Let7-P2 processing and the sequenced 3' moR reads. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Gmo-Let-7-P2b1a_5p |
mirBase accession | MIMAT0044154 |
Sequence |
0- UGAGGUAGUAGAUUGUAUAGUU -22
Get sequence
|
Star sequence |
Gmo-Let-7-P2b1a_3p* |
mirBase accession | MIMAT0044155 |
Sequence |
56- CUAAACAGUCUACUGCCUUCC -77
Get sequence
|