MirGeneDB 3.0
MirGeneDB ID

Gmo-Let-7-P2b1a

Family name LET-7 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-let-7f
Paralogues Gmo-Let-7-P1b1  Gmo-Let-7-P1b2  Gmo-Let-7-P1c2  Gmo-Let-7-P1d1  Gmo-Let-7-P1d2  Gmo-Let-7-P2a1a  Gmo-Let-7-P2a2a  Gmo-Let-7-P2a3a  Gmo-Let-7-P2a3b  Gmo-Let-7-P2a4a  Gmo-Let-7-P2a4b  Gmo-Let-7-P2b2a  Gmo-Let-7-P2b3a  Gmo-Let-7-P2b3b  Gmo-Let-7-P2b4a  Gmo-Let-7-P2b4b  Gmo-Let-7-P2c2a  Gmo-Let-7-P2c2b  Gmo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b1  Aga-Let-7  Agr-Let-7  Ami-Let-7-P2b1  Bge-Let-7  Bko-Let-7  Bpl-Let-7  Bta-Let-7-P2b1  Cfa-Let-7-P2b1  Cja-Let-7-P2b1  Cli-Let-7-P2b1  Cpi-Let-7-P2b1  Cpo-Let-7-P2b1  Cte-Let-7  Dan-Let-7  Dlo-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b1  Dpu-Let-7  Dre-Let-7-P2b1a  Dsi-Let-7  Dya-Let-7  Eba-Let-7  Eca-Let-7-P2b1  Egr-Let-7  Esc-Let-7  Ete-Let-7-P2b1  Gga-Let-7-P2b1  Gja-Let-7-P2b1  Gpa-Let-7  Gsa-Let-7  Gsp-Let-7  Hme-Let-7  Hmi-Let-7  Hru-Let-7  Hsa-Let-7-P2b1  Isc-Let-7  Laf-Let-7-P2b1  Lan-Let-7  Lch-Let-7-P2b1  Lgi-Let-7  Lhy-Let-7  Llo-Let-7  Loc-Let-7-P2b1  Mal-Let-7-P2b1a  Mdo-Let-7-P2b1  Mgi-Let-7  Mml-Let-7-P2b1  Mmr-Let-7-P2b1  Mmu-Let-7-P2b1  Mom-Let-7  Mun-Let-7-P2b1  Neu-Let-7-P2b1  Npo-Let-7  Oan-Let-7-P2b1  Obi-Let-7  Ocu-Let-7-P2b1  Ofu-Let-7  Ovu-Let-7  Pab-Let-7-P2b1  Pau-Let-7  Pbv-Let-7-P2b1  Pca-Let-7  Pcr-Let-7  Pdu-Let-7  Pfl-Let-7  Ple-Let-7  Pmi-Let-7  Pve-Let-7  Rno-Let-7-P2b1  Rph-Let-7  Sha-Let-7-P2b1  Sko-Let-7  Sma-Let-7  Sne-Let-7  Snu-Let-7  Spt-Let-7-P2b1  Spu-Let-7  Sro-Let-7  Tca-Let-7  Tgu-Let-7-P2b1  Tur-Let-7  War-Let-7  Xbo-Let-7 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1801: 26456-26532 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b1a)		 Let-7-P2b1a GeneScaffold_1801: 26456-26532 [-] UCSC Ensembl
Let-7-P2a1a GeneScaffold_1801: 26965-27035 [-] UCSC Ensembl
Seed GAGGUAG
Precursor
(pre-Mir +30nt flank)		 
GCCCAGACGUCUUGAUUCGCUCAUUCAGUGUGAGGUAGUAGAUUGUAUAGUUUAAGGGUAGUGAUUUUACCCGUUUCAGAAGAUAACUAAACAGUCUACUGCCUUCCUUGAGGAGUGAUAUUGCUUCAGGUCUACUA
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Structure
        10           20        30        40        50        60        
GCCCAGACGUCUUGAUU---|    A     UGU               A     UAAGGGUAGUGAUUU 
                    CGCUC UUCAG   GAGGUAGUAGAUUGU UAGUU               U
                    GUGAG GAGUU   UUCCGUCAUCUGACA AUCAA               A
AUCAUCUGGACUUCGUUAUA^    -     CC-               A     UAGAAGACUUUGCCC 
     130       120        110        100        90        80        70
Deep sequencing
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CommentAlthough there is a templated T at the 3' end of the 3p arm, the post-transcriptional addition of a terminal 3' U is supported by the conservation of Let7-P2 processing and the sequenced 3' DcRNA reads.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Let-7-P2b1a_5p
mirBase accessionMIMAT0044154
Sequence 
0- UGAGGUAGUAGAUUGUAUAGUU -22
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Star sequence

Gmo-Let-7-P2b1a_3p*
mirBase accessionMIMAT0044155
Sequence 
56- CUAAACAGUCUACUGCCUUCC -77
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