MirGeneDB 2.1

MirGeneDB ID

Gga-Let-7-P2b1

Family name LET-7 (all species)
Seed GAGGUAG
Species Chicken (Gallus gallus)
MiRBase ID gga-let-7f
Paralogues Gga-Let-7-P1c  Gga-Let-7-P1d  Gga-Let-7-P2a1  Gga-Let-7-P2a2  Gga-Let-7-P2a4  Gga-Let-7-P2b2  Gga-Let-7-P2b4  Gga-Let-7-P2c1  Gga-Let-7-P2c2  Gga-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2b1  Ami-Let-7-P2b1  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2b1  Cfa-Let-7-P2b1  Cgi-Let-7  Cli-Let-7-P2b1  Cpi-Let-7-P2b1  Cpo-Let-7-P2b1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2b1  Dpu-Let-7  Dre-Let-7-P2b1a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2b1  Gja-Let-7-P2b1  Gmo-Let-7-P2b1a  Hme-Let-7  Hsa-Let-7-P2b1  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2b1  Lgi-Let-7  Loc-Let-7-P2b1  Mal-Let-7-P2b1a  Mdo-Let-7-P2b1  Mml-Let-7-P2b1  Mmu-Let-7-P2b1  Mun-Let-7-P2b1  Npo-Let-7  Oan-Let-7-P2b1  Obi-Let-7  Ocu-Let-7-P2b1  Ovu-Let-7  Pbv-Let-7-P2b1  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2b1  Sha-Let-7-P2b1  Sko-Let-7  Spt-Let-7-P2b1  Spu-Let-7  Tca-Let-7  Tgu-Let-7-P2b1  Xbo-Let-7 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(Gallus_gallus.GRCg6a)
12: 6489795-6489871 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2b1)
Let-7-P2c1 12: 6488759-6488833 [-] UCSC Ensembl
Let-7-P2b1 12: 6489795-6489871 [-] UCSC Ensembl
Let-7-P2a1 12: 6490211-6490282 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGCUUAAGUACAUGCUUCUCUGUCAGAGUGAGGUAGUAGAUUGUAUAGUUGUAGGGUAGUUAUUUUACCCUGUUCAGGAGAUAACUAUACAAUCUAUUGCCUUCCCUGAGGAGUAAAACAAACUGCGGUCCUUUG
Get precursor sequence
Structure
        10           20        30        40        50        60        
AGAGCUUAAGUACAUGCUU---|   G    AGU                     GUAGGGUAGUUAUUU 
                      CUCU UCAG   GAGGUAGUAGAUUGUAUAGUU               U
                      GAGG AGUC   UUCCGUUAUCUAACAUAUCAA               A
GUUUCCUGGCGUCAAACAAAAU^   -    CC-                     UAGAGGACUUGUCCC 
     130       120        110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ad Br Br Ce Ce Ce Ce Ch He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Let-7-P2b1_5p

mirBase accessionMIMAT0001162
Sequence
0- UGAGGUAGUAGAUUGUAUAGUU -22
Get sequence
Proposed targets TargetScanVert: gga-let-7f-5p
miRDB: MIMAT0001162
Star sequence

Gga-Let-7-P2b1_3p*

mirBase accessionMIMAT0026528
Sequence
56- CUAUACAAUCUAUUGCCUUCC -77
Get sequence
Proposed targets TargetScanVert: gga-let-7f-3p
miRDB: MIMAT0026528