MirGeneDB ID | Gga-Let-7-P1c |
Family name |
LET-7 (all species) |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-let-7c
|
Paralogues |
Gga-Let-7-P1d
Gga-Let-7-P2a1
Gga-Let-7-P2a2
Gga-Let-7-P2a4
Gga-Let-7-P2b1
Gga-Let-7-P2b2
Gga-Let-7-P2b4
Gga-Let-7-P2c1
Gga-Let-7-P2c2
Gga-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P1c
Aga-Let-7
Agr-Let-7
Ami-Let-7-P1c
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P1c
Cfa-Let-7-P1c
Cin-Let-7-P1
Cja-Let-7-P1c
Cli-Let-7-P1c
Cpi-Let-7-P1c
Cpo-Let-7-P1c
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P1c
Dpu-Let-7
Dre-Let-7-P1c1
Dre-Let-7-P1c2
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P1c
Egr-Let-7
Esc-Let-7
Ete-Let-7-P1c
Gja-Let-7-P1c
Gmo-Let-7-P1c2
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P1c
Isc-Let-7
Laf-Let-7-P1c
Lan-Let-7
Lch-Let-7-P1c
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P1c
Mal-Let-7-P1c2
Mgi-Let-7
Mml-Let-7-P1c
Mmr-Let-7-P1c
Mmu-Let-7-P1c
Mom-Let-7
Mun-Let-7-P1c
Neu-Let-7-P1c
Npo-Let-7
Oan-Let-7-P1c
Obi-Let-7
Ocu-Let-7-P1c
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P1c
Pau-Let-7
Pbv-Let-7-P1c
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P1c
Rph-Let-7
Sha-Let-7-P1c
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P1c
Spu-Let-7
Sro-Let-7
Sto-Let-7-P1c
Tca-Let-7
Tgu-Let-7-P1c
Tur-Let-7
War-Let-7
Xbo-Let-7
Xla-Let-7-P1c3
Xla-Let-7-P1c4
Xtr-Let-7-P1c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
1: 100395770-100395836 [+]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Let-7-P1c) |
Mir-10-P2c
1: 100395020-100395078 [+]
UCSC
Ensembl
Let-7-P1c
1: 100395770-100395836 [+]
UCSC
Ensembl
Mir-10-P3c
1: 100428113-100428174 [+]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
GUCACCGUCGGAAGCUGUGUGCAUCCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGCACACUUGAGCCAUCGAGGAAUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUCACCGUCGGAAGCUG---| A UU G U UAGAGUUACA
UGUGC UCCGGG GAG UAG AGGUUGUAUGGUU \
ACACG AGGUUC UUC AUC UCCAACAUGUCAA C
CUUAAGGAGCUACCGAGUUC^ - CU G U UUGAGGGUCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Mature sequence |
Gga-Let-7-P1c_5p |
mirBase accession | MIMAT0001104 |
Sequence |
0- UGAGGUAGUAGGUUGUAUGGUU -22
Get sequence
|
Proposed targets |
TargetScanVert: gga-let-7c-5p
miRDB: MIMAT0001104
|
Star sequence |
Gga-Let-7-P1c_3p* |
mirBase accession | MIMAT0026492 |
Sequence |
45- CUGUACAACCUUCUAGCUUUCC -67
Get sequence
|
Proposed targets |
TargetScanVert: gga-let-7c-3p
miRDB: MIMAT0026492
|