Let-7-P1c

MirGeneDB ID

Gga-Let-7-P1c

Family name

LET-7 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-let-7c

Paralogues

Gga-Let-7-P1d Gga-Let-7-P2a1 Gga-Let-7-P2a2 Gga-Let-7-P2a4 Gga-Let-7-P2b1 Gga-Let-7-P2b2 Gga-Let-7-P2b4 Gga-Let-7-P2c1 Gga-Let-7-P2c2 Gga-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1c Aga-Let-7 Agr-Let-7 Ami-Let-7-P1c Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1c Cfa-Let-7-P1c Cin-Let-7-P1 Cja-Let-7-P1c Cli-Let-7-P1c Cpi-Let-7-P1c Cpo-Let-7-P1c Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P1c Dpu-Let-7 Dre-Let-7-P1c1 Dre-Let-7-P1c2 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1c Egr-Let-7 Esc-Let-7 Ete-Let-7-P1c Gja-Let-7-P1c Gmo-Let-7-P1c2 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1c Isc-Let-7 Laf-Let-7-P1c Lan-Let-7 Lch-Let-7-P1c Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1c Mal-Let-7-P1c2 Mgi-Let-7 Mml-Let-7-P1c Mmr-Let-7-P1c Mmu-Let-7-P1c Mom-Let-7 Mun-Let-7-P1c Neu-Let-7-P1c Npo-Let-7 Oan-Let-7-P1c Obi-Let-7 Ocu-Let-7-P1c Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1c Pau-Let-7 Pbv-Let-7-P1c Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1c Rph-Let-7 Sha-Let-7-P1c Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1c Spu-Let-7 Sro-Let-7 Sto-Let-7-P1c Tca-Let-7 Tgu-Let-7-P1c Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P1c3 Xla-Let-7-P1c4 Xtr-Let-7-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

1: 100395770-100395836 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P1c)

Mir-10-P2c 1: 100395020-100395078 [+] UCSC Ensembl
Let-7-P1c 1: 100395770-100395836 [+] UCSC Ensembl
Mir-10-P3c 1: 100428113-100428174 [+] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

GUCACCGUCGGAAGCUGUGUGCAUCCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGCACACUUGAGCCAUCGAGGAAUUC

Get precursor sequence

Structure

        10           20        30        40        50        60   
GUCACCGUCGGAAGCUG---|    A      UU   G   U             UAGAGUUACA 
                    UGUGC UCCGGG  GAG UAG AGGUUGUAUGGUU          \
                    ACACG AGGUUC  UUC AUC UCCAACAUGUCAA          C
CUUAAGGAGCUACCGAGUUC^    -      CU   G   U             UUGAGGGUCC 
     120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Let-7-P1c_5p

mirBase accession

MIMAT0001104

Sequence

0- UGAGGUAGUAGGUUGUAUGGUU -22

Get sequence

Proposed targets

TargetScanVert: gga-let-7c-5p
miRDB: MIMAT0001104

Star sequence

Gga-Let-7-P1c_3p*

mirBase accession

MIMAT0026492

Sequence

45- CUGUACAACCUUCUAGCUUUCC -67

Get sequence

Proposed targets

TargetScanVert: gga-let-7c-3p
miRDB: MIMAT0026492