MirGeneDB ID | Mml-Let-7-P1c |
Family name |
LET-7 (all species) |
Species |
Rhesus monkey (Macaca mulatta) |
MiRBase ID |
mml-let-7c
|
Paralogues |
Mml-Let-7-P1b
Mml-Let-7-P1d
Mml-Let-7-P2a1
Mml-Let-7-P2a2
Mml-Let-7-P2a3
Mml-Let-7-P2b1
Mml-Let-7-P2b2
Mml-Let-7-P2b3
Mml-Let-7-P2c1
Mml-Let-7-P2c2
Mml-Let-7-P2c3
|
Orthologues |
Aae-Let-7
Aca-Let-7-P1c
Aga-Let-7
Agr-Let-7
Ami-Let-7-P1c
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Bta-Let-7-P1c
Cfa-Let-7-P1c
Cin-Let-7-P1
Cja-Let-7-P1c
Cli-Let-7-P1c
Cpi-Let-7-P1c
Cpo-Let-7-P1c
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dno-Let-7-P1c
Dpu-Let-7
Dre-Let-7-P1c1
Dre-Let-7-P1c2
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Eca-Let-7-P1c
Egr-Let-7
Esc-Let-7
Ete-Let-7-P1c
Gga-Let-7-P1c
Gja-Let-7-P1c
Gmo-Let-7-P1c2
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Hsa-Let-7-P1c
Isc-Let-7
Laf-Let-7-P1c
Lan-Let-7
Lch-Let-7-P1c
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Loc-Let-7-P1c
Mal-Let-7-P1c2
Mgi-Let-7
Mmr-Let-7-P1c
Mmu-Let-7-P1c
Mom-Let-7
Mun-Let-7-P1c
Neu-Let-7-P1c
Npo-Let-7
Oan-Let-7-P1c
Obi-Let-7
Ocu-Let-7-P1c
Ofu-Let-7
Ovu-Let-7
Pab-Let-7-P1c
Pau-Let-7
Pbv-Let-7-P1c
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rno-Let-7-P1c
Rph-Let-7
Sha-Let-7-P1c
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spt-Let-7-P1c
Spu-Let-7
Sro-Let-7
Sto-Let-7-P1c
Tca-Let-7
Tgu-Let-7-P1c
Tur-Let-7
War-Let-7
Xbo-Let-7
Xla-Let-7-P1c3
Xla-Let-7-P1c4
Xtr-Let-7-P1c
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_003339765.3_Mmul_10_traces) |
CM014338.1: 30309577-30309643 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Let-7-P1c) |
Mir-10-P3c
CM014338.1: 30260526-30260586 [-]
UCSC
Ensembl
Let-7-P1c
CM014338.1: 30309577-30309643 [-]
UCSC
Ensembl
Mir-10-P2c
CM014338.1: 30310316-30310374 [-]
UCSC
Ensembl
|
Seed |
GAGGUAG |
Precursor (pre-Mir +30nt flank) |
AGCAACUUUGGAAGCUGUGUGCAUCCGGGUUGAGGUAGUAGGUUGUAUGGUUUAGAGUUACACCCUGGGAGUUAACUGUACAACCUUCUAGCUUUCCUUGGAGCACACUUGAGCCAUCGAGGAAUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGCAACUUUGGAAGCUG---| A UU G U UAGAGUUACA
UGUGC UCCGGG GAG UAG AGGUUGUAUGGUU \
ACACG AGGUUC UUC AUC UCCAACAUGUCAA C
CUUAAGGAGCUACCGAGUUC^ - CU G U UUGAGGGUCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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Mature sequence |
Mml-Let-7-P1c_5p |
mirBase accession | MIMAT0006153 |
Sequence |
0- UGAGGUAGUAGGUUGUAUGGUU -22
Get sequence
|
Proposed targets |
TargetScanVert: mml-let-7c-5p
|
Star sequence |
Mml-Let-7-P1c_3p* |
mirBase accession | MIMAT0026791 |
Sequence |
45- CUGUACAACCUUCUAGCUUUCC -67
Get sequence
|
Proposed targets |
TargetScanVert: mml-let-7c-3p
|