Let-7-P2b2

MirGeneDB ID

Sha-Let-7-P2b2

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Let-7-P1b Sha-Let-7-P1c Sha-Let-7-P1d Sha-Let-7-P2a1 Sha-Let-7-P2a2 Sha-Let-7-P2a3 Sha-Let-7-P2b1 Sha-Let-7-P2c1 Sha-Let-7-P2c2 Sha-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P2b2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2b2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2b2 Cfa-Let-7-P2b2 Cja-Let-7-P2b2 Cli-Let-7-P2b2 Cmi-Let-7-P2b2 Cpi-Let-7-P2b2 Cpo-Let-7-P2b2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2b2 Dpu-Let-7 Dre-Let-7-P2b2a Dre-Let-7-P2b2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2b2 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2b2 Gga-Let-7-P2b2 Gja-Let-7-P2b2 Gmo-Let-7-P2b2a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2b2 Isc-Let-7 Laf-Let-7-P2b2 Lan-Let-7 Lch-Let-7-P2b2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2b2 Mal-Let-7-P2b2a Mal-Let-7-P2b2b Mdo-Let-7-P2b2 Mgi-Let-7 Mml-Let-7-P2b2 Mmr-Let-7-P2b2 Mmu-Let-7-P2b2 Mom-Let-7 Mun-Let-7-P2b2 Neu-Let-7-P2b2 Npo-Let-7 Oan-Let-7-P2b2 Obi-Let-7 Ocu-Let-7-P2b2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2b2 Pau-Let-7 Pbv-Let-7-P2b2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2b2 Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2b2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2b2 Tca-Let-7 Tgu-Let-7-P2b2 Tni-Let-7-P2b2a Tni-Let-7-P2b2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2b2c Xla-Let-7-P2b2d Xtr-Let-7-P2b2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(DEVIL_add)

AFEY01110348_Let-7-P8: 2660-2736 [+] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

CGGACGGUCUCUCUCGGCGCCUCGGCGGGGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGCCCCAGUCAGAAGAUAACUAUACAACCUACUGCCUUCCCUGAGGGGCUGCCUCAGCCCGGCCCAGCCA

Get precursor sequence

Structure

        10           20        30        40        50        60        
CGGACGGUCUCUCUCGGC---|    GG     U                     UCAGGGUAGUGAUUU 
                     GCCUC  CGGGG GAGGUAGUAGGUUGUGUGGUU               U
                     CGGGG  GUCCC UUCCGUCAUCCAACAUAUCAA               G
ACCGACCCGGCCCGACUCCGU^    A-     -                     UAGAAGACUGACCCC 
     130       120        110        100        90        80        70

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Yes

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Let-7-P2b2_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGGUUGUGUGGUU -22

Get sequence

Star sequence

Sha-Let-7-P2b2_3p*

mirBase accession

None

Sequence

56- CUAUACAACCUACUGCCUUCC -77

Get sequence