Let-7-P2b2

MirGeneDB ID

Mun-Let-7-P2b2

Family name

Species

Microcaecilia (Microcaecilia unicolor)

MiRBase ID

Paralogues

Mun-Let-7-P1b Mun-Let-7-P1c Mun-Let-7-P1d Mun-Let-7-P2a1 Mun-Let-7-P2a2 Mun-Let-7-P2a3 Mun-Let-7-P2a4 Mun-Let-7-P2b1 Mun-Let-7-P2b3 Mun-Let-7-P2b4 Mun-Let-7-P2c1 Mun-Let-7-P2c2 Mun-Let-7-P2c3 Mun-Let-7-P2c4

Orthologues

Aae-Let-7 Aca-Let-7-P2b2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2b2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2b2 Cfa-Let-7-P2b2 Cja-Let-7-P2b2 Cli-Let-7-P2b2 Cmi-Let-7-P2b2 Cpi-Let-7-P2b2 Cpo-Let-7-P2b2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2b2 Dpu-Let-7 Dre-Let-7-P2b2a Dre-Let-7-P2b2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2b2 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2b2 Gga-Let-7-P2b2 Gja-Let-7-P2b2 Gmo-Let-7-P2b2a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2b2 Isc-Let-7 Laf-Let-7-P2b2 Lan-Let-7 Lch-Let-7-P2b2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2b2 Mal-Let-7-P2b2a Mal-Let-7-P2b2b Mdo-Let-7-P2b2 Mgi-Let-7 Mml-Let-7-P2b2 Mmr-Let-7-P2b2 Mmu-Let-7-P2b2 Mom-Let-7 Neu-Let-7-P2b2 Npo-Let-7 Oan-Let-7-P2b2 Obi-Let-7 Ocu-Let-7-P2b2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2b2 Pau-Let-7 Pbv-Let-7-P2b2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2b2 Rph-Let-7 Sha-Let-7-P2b2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2b2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2b2 Tca-Let-7 Tgu-Let-7-P2b2 Tni-Let-7-P2b2a Tni-Let-7-P2b2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2b2c Xla-Let-7-P2b2d Xtr-Let-7-P2b2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_901765095.2_aMicUni1.2)

LR594640.1: 67326743-67326819 [+]

Clustered miRNAs
(< 50kb from Let-7-P2b2)

Let-7-P2a2 LR594640.1: 67323794-67323863 [+]
Let-7-P2b2 LR594640.1: 67326743-67326819 [+]

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

CUCUUGCCUUUCAACAGUGCUUUAGCAGAGUGAGGUAGUAGGUUGUGUGGUUUCAGGGUAGUGAUUUUGUCCCAGUCAGGUGAUAACUAUGCAACCUACUGCCUUCCCUGAUAAGCAAUAUAACUCAGGAACUCAAA

Get precursor sequence

Structure

        10           20        30        40        50        60        
CUCUUGCCUUUCAACAG---|    UAG   AGU                     UCAGGGUAGUGAUUU 
                    UGCUU   CAG   GAGGUAGUAGGUUGUGUGGUU               U
                    ACGAA   GUC   UUCCGUCAUCCAACGUAUCAA               G
AAACUCAAGGACUCAAUAUA^    UA-   CC-                     UAGUGGACUGACCCU 
     130       120        110        100        90        80        70

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Mun-Let-7-P2b2_5p

mirBase accession

None

Sequence

0- UGAGGUAGUAGGUUGUGUGGUU -22

Get sequence

Star sequence

Mun-Let-7-P2b2_3p* (predicted)

mirBase accession

None

Sequence

56- CUAUGCAACCUACUGCCUUCC -77

Get sequence