Let-7-P1b2

MirGeneDB ID

Dre-Let-7-P1b2

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-let-7d-2

Paralogues

Dre-Let-7-P1b1 Dre-Let-7-P1c1 Dre-Let-7-P1c2 Dre-Let-7-P1d1 Dre-Let-7-P1d2 Dre-Let-7-P2a1a Dre-Let-7-P2a2a Dre-Let-7-P2a2b Dre-Let-7-P2a3a Dre-Let-7-P2a3b Dre-Let-7-P2a4a Dre-Let-7-P2a4b Dre-Let-7-P2b1a Dre-Let-7-P2b2a Dre-Let-7-P2b2b Dre-Let-7-P2b3a Dre-Let-7-P2b4a Dre-Let-7-P2b4b Dre-Let-7-P2c2b Dre-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1b Ami-Let-7-P1b Bge-Let-7 Bpl-Let-7 Bta-Let-7-P1b Cfa-Let-7-P1b Cgi-Let-7 Cin-Let-7-P1 Cpi-Let-7-P1b Cpo-Let-7-P1b Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Esc-Let-7 Ete-Let-7-P1b Gja-Let-7-P1b Gmo-Let-7-P1b2 Hme-Let-7 Hsa-Let-7-P1b Isc-Let-7 Lan-Let-7 Lch-Let-7-P1b Lgi-Let-7 Loc-Let-7-P1b Mal-Let-7-P1b2 Mdo-Let-7-P1b Mml-Let-7-P1b Mmu-Let-7-P1b Mun-Let-7-P1b Npo-Let-7 Oan-Let-7-P1b Obi-Let-7 Ocu-Let-7-P1b Ovu-Let-7 Pbv-Let-7-P1b Pfl-Let-7 Pmi-Let-7 Rno-Let-7-P1b Sha-Let-7-P1b Sko-Let-7 Spt-Let-7-P1b Spu-Let-7 Sto-Let-7-P1b Tca-Let-7 Tni-Let-7-P1b2 Xbo-Let-7 Xtr-Let-7-P1b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr19: 9429867-9429936 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P1b2)

Let-7-P1b2 chr19: 9429867-9429936 [+] UCSC Ensembl
Mir-10-P3b2 chr19: 9443800-9443858 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAUGGAUACUGGAGUCUGUGCGCUGCAGGCUGAGGUAGUUGGUUGUAUGGUUUUGCAUCAUAAUCAGCCUGGAGUUAACUGUACAACCUUCUAGCUUUCCCUGCGGUGUCACCAUUACGUCGAGGUGAGU

Get precursor sequence

Structure

        10         20         30        40        50        60    
AAUGGAUACUGGAGUCU-   -|        CU   G   UU            UUGCAUCAUAA 
                  GUG CGCUGCAGG  GAG UAG  GGUUGUAUGGUU           U
                  CAC GUGGCGUCC  UUC AUC  CCAACAUGUCAA           C
UGAGUGGAGCUGCAUUAC   U^        CU   G   UU            UUGAGGUCCGA 
.       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Let-7-P1b2_5p

mirBase accession

MIMAT0001762

Sequence

0- UGAGGUAGUUGGUUGUAUGGUU -22

Get sequence

Proposed targets

TargetScanFish: dre-let-7d

Star sequence

Dre-Let-7-P1b2_3p*

mirBase accession

MIMAT0031931

Sequence

48- CUGUACAACCUUCUAGCUUUCC -70

Get sequence