MirGeneDB ID | Cpo-Mir-10-P2b |
Family name |
MIR-10 (all species) |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-99b
|
Paralogues |
Cpo-Mir-10-P1b-v1
Cpo-Mir-10-P1c-v1
Cpo-Mir-10-P2c
Cpo-Mir-10-P2d
Cpo-Mir-10-P3b
Cpo-Mir-10-P3c
Cpo-Mir-10-P3d
|
Orthologues |
Aae-Mir-10-P2
Aca-Mir-10-P2b
Adi-Mir-10
Aga-Mir-10-P2
Agr-Mir-10-P2
Ami-Mir-10-P2b
Asp-Mir-10
Bfl-Mir-10-P2-v1
Bge-Mir-10-P2
Bko-Mir-10-P2
Bla-Mir-10-P2-v1
Bpl-Mir-10-P2
Bta-Mir-10-P2b
Cbr-Mir-10-P2
Cel-Mir-10-P2
Cfa-Mir-10-P2b
Cin-Mir-10-P2
Cja-Mir-10-P2b
Cpi-Mir-10-P2b
Cte-Mir-10-P2
Dan-Mir-10-P2
Dgr-Mir-10-P2
Dlo-Mir-10-P2
Dma-Mir-10-P2
Dme-Mir-10-P2
Dmo-Mir-10-P2
Dpu-Mir-10-P2
Dsi-Mir-10-P2
Dya-Mir-10-P2
Eba-Mir-10-P2
Eca-Mir-10-P2b
Ete-Mir-10-P2b
Gja-Mir-10-P2b
Gpa-Mir-10-P2
Gsp-Mir-10-P2
Hru-Mir-10-P2
Hsa-Mir-10-P2b
Isc-Mir-10-P2
Laf-Mir-10-P2b
Lan-Mir-10-P2
Lch-Mir-10-P2b
Lgi-Mir-10-P2
Lhy-Mir-10-P2
Llo-Mir-10-P2
Mgi-Mir-10-P2
Mml-Mir-10-P2b
Mmr-Mir-10-P2b
Mmu-Mir-10-P2b
Mom-Mir-10-P2
Mun-Mir-10-P2b
Neu-Mir-10-P2b
Npo-Mir-10-P2
Nve-Mir-10
Oan-Mir-10-P2b
Obi-Mir-10-P2
Ocu-Mir-10-P2b
Ofu-Mir-10-P2
Ovu-Mir-10-P2
Pab-Mir-10-P2b
Pau-Mir-10-P2
Pbv-Mir-10-P2b
Pca-Mir-10-P2
Pdu-Mir-10-P2
Pfl-Mir-10-P2
Ple-Mir-10-P2
Pmi-Mir-10-P2
Pve-Mir-10-P2
Rno-Mir-10-P2b
Rph-Mir-10-P2
Sha-Mir-10-P2b
Sko-Mir-10-P2
Snu-Mir-10-P2
Spt-Mir-10-P2b
Sto-Mir-10-P2b
Tca-Mir-10-P2
Tur-Mir-10-P2
Xbo-Mir-10-P2
Xbo-Mir-10-P2-as
Xla-Mir-10-P2b1
Xla-Mir-10-P2b2
Xtr-Mir-10-P2b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Eumetazoa
|
Genome context (cavPor3) |
scaffold_70: 6340368-6340427 [-]
UCSC
|
Clustered miRNAs (< 50kb from Mir-10-P2b) |
Mir-10-P3b
scaffold_70: 6339828-6339887 [-]
UCSC
Let-7-P1b
scaffold_70: 6340207-6340273 [-]
UCSC
Mir-10-P2b
scaffold_70: 6340368-6340427 [-]
UCSC
|
Seed |
ACCCGUA |
Precursor (pre-Mir +30nt flank) |
CGGGGGCCUGGACUCCUGGGUCCUGGCACCCACCCGUAGAACCGACCUUGCGGGGCCUUCGCCACACACAAGCUCGUGUCUGUGGGUCCGUGUCGGGGGCUCAUCAUCGCGGCUGGGACC
Get precursor sequence
|
Structure | 10 20 30 40 50
CGGGGGCCUGGACUCCU- -| CC AC C CGGGGCCU
GGG UCCUGGCAC ACCCGUAGA CGA CUUG U
CUC GGGGCUGUG UGGGUGUCU GCU GAAC C
CCAGGGUCGGCGCUACUA G^ CC GU C ACACACCG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Based on the 3' DcRNA reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA. |
3' NTU |
Yes
|
Motifs | UG at 5p(-14) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-10-P2b_5p |
mirBase accession | MIMAT0046943 |
Sequence |
0- CACCCGUAGAACCGACCUUGCG -22
Get sequence
|
Star sequence |
Cpo-Mir-10-P2b_3p* |
mirBase accession | MIMAT0046944 |
Sequence |
38- CAAGCUCGUGUCUGUGGGUCCG -60
Get sequence
|