MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-10-P3d

Family name MIR-10 (all species)
Seed CCCUGAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-125b-1
Paralogues Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2  Xtr-Mir-10-P2b  Xtr-Mir-10-P2c  Xtr-Mir-10-P3b  Xtr-Mir-10-P3c 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Ami-Mir-10-P3d  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2  Mdo-Mir-10-P3d  Mml-Mir-10-P3d  Mmu-Mir-10-P3d  Mun-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ovu-Mir-10-P3  Pbv-Mir-10-P3d  Pmi-Mir-10-P3  Rno-Mir-10-P3d  Sha-Mir-10-P3d  Sko-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2  Xbo-Mir-10-P3  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(xenTro9_add)
chr7: 88008765-88008827 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCAUUCAGUAGCUUUGCACCCCUCUCAAUCCCUGAGACCCUAACUUGUGAUGUUUAGCUUUAAAAAUCCACGGGUUAGGCUCUUGGGAGCUGUGAGUUGUGCCCUUGCAUCUAAUAUUGAG
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Structure
        10          20        30         40        50        60 
GUGCAUUCAGUAGCUUU--    CC   U  A-|   U    C           AUGUUUAGC 
                   GCAC  CUC CA  UCCC GAGA CCUAACUUGUG         \
                   CGUG  GAG GU  AGGG UUCU GGAUUGGGCAC         U
GAGUUAUAAUCUACGUUCC    UU   U  CG^   -    C           CUAAAAAUU 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-10-P3d_5p

mirBase accessionMIMAT0003586
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
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Proposed targets TargetScanVert: xtr-miR-125b
Star sequence

Xtr-Mir-10-P3d_3p*

mirBase accessionNone
Sequence
41- ACGGGUUAGGCUCUUGGGAGCU -63
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