Mir-10-P3d

MirGeneDB ID

Xtr-Mir-10-P3d

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-125b-1

Paralogues

Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2 Xtr-Mir-10-P1c-v1 Xtr-Mir-10-P1c-v2 Xtr-Mir-10-P1d-v1 Xtr-Mir-10-P1d-v2 Xtr-Mir-10-P2b Xtr-Mir-10-P2c Xtr-Mir-10-P3b Xtr-Mir-10-P3c

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3d Ami-Mir-10-P3d Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3d Cfa-Mir-10-P3d Cgi-Mir-10-P3 Cin-Mir-10-P3 Cli-Mir-10-P3d Cmi-Mir-10-P3d Cpi-Mir-10-P3d Cpo-Mir-10-P3d Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3d Dpu-Mir-10-P3 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3d Gga-Mir-10-P3d Gja-Mir-10-P3d Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2 Hsa-Mir-10-P3d Isc-Mir-10-P3 Lan-Mir-10-P3 Lch-Mir-10-P3d Lgi-Mir-10-P3 Loc-Mir-10-P3d Mal-Mir-10-P3d1 Mal-Mir-10-P3d2 Mdo-Mir-10-P3d Mml-Mir-10-P3d Mmu-Mir-10-P3d Mun-Mir-10-P3d Nve-Mir-10 Oan-Mir-10-P3d Obi-Mir-10-P3 Ocu-Mir-10-P3d Ovu-Mir-10-P3 Pbv-Mir-10-P3d Pmi-Mir-10-P3 Rno-Mir-10-P3d Sha-Mir-10-P3d Sko-Mir-10-P3 Spt-Mir-10-P3d Spu-Mir-10-P3 Sto-Mir-10-P3d Tca-Mir-10-P3 Tgu-Mir-10-P3d Tni-Mir-10-P3d1 Tni-Mir-10-P3d2 Xbo-Mir-10-P3 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(xenTro9_add)

chr7: 88008765-88008827 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGCAUUCAGUAGCUUUGCACCCCUCUCAAUCCCUGAGACCCUAACUUGUGAUGUUUAGCUUUAAAAAUCCACGGGUUAGGCUCUUGGGAGCUGUGAGUUGUGCCCUUGCAUCUAAUAUUGAG

Get precursor sequence

Structure

        10          20        30         40        50        60 
GUGCAUUCAGUAGCUUU--    CC   U  A-|   U    C           AUGUUUAGC 
                   GCAC  CUC CA  UCCC GAGA CCUAACUUGUG         \
                   CGUG  GAG GU  AGGG UUCU GGAUUGGGCAC         U
GAGUUAUAAUCUACGUUCC    UU   U  CG^   -    C           CUAAAAAUU 
 120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Em	Em	Em	Em	He

Mature sequence

Xtr-Mir-10-P3d_5p

mirBase accession

MIMAT0003586

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-125b

Star sequence

Xtr-Mir-10-P3d_3p*

mirBase accession

None

Sequence

41- ACGGGUUAGGCUCUUGGGAGCU -63

Get sequence