MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-10-P1d1-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b1-v2  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c1-v2  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2a-v2  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1c2b-v2  Mal-Mir-10-P1d1-v2  Mal-Mir-10-P2c2  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mal-Mir-10-P3c2  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Gga-Mir-10-P1d-v1  Gga-Mir-10-P1d-v2  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884694.1: 1805180-1805241 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCACCUAAACCACAUUAGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAAGUCCAAACAGUCGCAAAUACGUCUCUACAGGAAUACAUGGGCAACUGAAAUACCACUCCAGCCAA
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Structure
        10          20        30        40        50        60 
ACCACCUAAACCACAUU--|         A   AC        AC  A      GUGAAGUC 
                   AGUUGUCUAU UGU  CCUGUAGA  CG AUUUGU        \
                   UCAACGGGUA AUA  GGACAUCU  GC UAAACG        C
AACCGACCUCACCAUAAAG^         C   A-        CU  A      CUGACAAA 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1d1-v1_5p

mirBase accessionNone
Sequence
0- UACCCUGUAGAACCGAAUUUGU -22
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Star sequence

Mal-Mir-10-P1d1-v1_3p*

mirBase accessionNone
Sequence
41- AAAUACGUCUCUACAGGAAUA -62
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