MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-10-P1d1

Family name MIR-10 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P2c2  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mal-Mir-10-P3c2  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1d1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tni-Mir-10-P1d1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884694.1: 1805180-1805241 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d1-v1)		 Mir-10-P1d1-v1 KV884694.1: 1805180-1805241 [-] UCSC Ensembl
Mir-10-P1d1-v2 KV884694.1: 1805181-1805240 [-] UCSC Ensembl
Mir-196-P4a KV884694.1: 1840009-1840067 [-] UCSC Ensembl
Variant

Mal-Mir-10-P1d1-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
ACCACCUAAACCACAUUAGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAAGUCCAAACAGUCGCAAAUACGUCUCUACAGGAAUACAUGGGCAACUGAAAUACCACUCCAGCCAA
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACCACCUAAACCACAUU--|         A   AC        AC  A      GUGAAGUC 
                   AGUUGUCUAU UGU  CCUGUAGA  CG AUUUGU        \
                   UCAACGGGUA AUA  GGACAUCU  GC UAAACG        C
AACCGACCUCACCAUAAAG^         C   A-        CU  A      CUGACAAA 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1d1-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAACCGAAUUUGU -22
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Star sequence

Mal-Mir-10-P1d1-v1_3p*
mirBase accessionNone
Sequence 
41- AAAUACGUCUCUACAGGAAUA -62
Get sequence
Variant

Mal-Mir-10-P1d1-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
CCACCUAAACCACAUUAGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAAGUCCAAACAGUCGCAAAUACGUCUCUACAGGAAUACAUGGGCAACUGAAAUACCACUCCAGCCA
Get precursor sequence
Structure
        10          20        30        40        50          
CCACCUAAACCACAUUA--|        A   AC        AC  A       UGAAGUC 
                   GUUGUCUAU UGU  CCUGUAGA  CG AUUUGUG       \
                   CAACGGGUA AUA  GGACAUCU  GC UAAACGC       C
ACCGACCUCACCAUAAAGU^        C   A-        CU  A       UGACAAA 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-10-P1d1-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAACCGAAUUUGUG -22
Get sequence
Star sequence

Mal-Mir-10-P1d1-v2_3p*
mirBase accessionNone
Sequence 
39- CAAAUACGUCUCUACAGGAAU -60
Get sequence