MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-10-P1d

Family name MIR-10 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-10-P1b-v1  Cmi-Mir-10-P1c-v1  Cmi-Mir-10-P2c  Cmi-Mir-10-P2d  Cmi-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1d1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Mal-Mir-10-P1d1-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tni-Mir-10-P1d1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636119.1: 284355-284416 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d-v1)		 Mir-10-P1d-v1 KI636119.1: 284355-284416 [+] UCSC Ensembl
Mir-10-P1d-v2 KI636119.1: 284356-284415 [+] UCSC Ensembl
Variant

Cmi-Mir-10-P1d-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
CGCAGGCUAUUUCAAGCAGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUUAGCAGUUUGUAAUCACAAAUUCGUCUCUGAGGGAGUAUAUGGUCGAUGUCAAGACAACAGCUUUAGC
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Structure
        10          20        30        40        50        60 
CGCAGGCUAUUUCAAGCA--|   U        A    G    AC          UUAGCAG 
                    GUCG CUAUAUAU CCCU UAGA  CGAAUUUGUG       \
                    UAGC GGUAUAUG GGGA GUCU  GCUUAAACAC       U
CGAUUUCGACAACAGAACUG^   U        A    -    CU          UAAUGUU 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-10-P1d-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAACCGAAUUUGUG -23
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Star sequence

Cmi-Mir-10-P1d-v1_3p*
mirBase accessionNone
Sequence 
40- CAAAUUCGUCUCUGAGGGAGUA -62
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Variant

Cmi-Mir-10-P1d-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
GCAGGCUAUUUCAAGCAGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUUAGCAGUUUGUAAUCACAAAUUCGUCUCUGAGGGAGUAUAUGGUCGAUGUCAAGACAACAGCUUUAG
Get precursor sequence
Structure
        10          20        30        40        50          
GCAGGCUAUUUCAAGCA--|   U        A    G    AC          UUAGCAG 
                   GUCG CUAUAUAU CCCU UAGA  CGAAUUUGUG       \
                   UAGC GGUAUAUG GGGA GUCU  GCUUAAACAC       U
GAUUUCGACAACAGAACUG^   U        A    -    CU          UAAUGUU 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-10-P1d-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAACCGAAUUUGUGU -23
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Star sequence

Cmi-Mir-10-P1d-v2_3p*
mirBase accessionNone
Sequence 
38- ACAAAUUCGUCUCUGAGGGAGU -60
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