MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-10-P1d

Family name MIR-10 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-10c
Paralogues Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P2b  Xtr-Mir-10-P2c  Xtr-Mir-10-P3b  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1d1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Mal-Mir-10-P1d1-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tni-Mir-10-P1d1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(xenTro9_add)		 chr2: 142821737-142821793 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d-v2)		 Mir-10-P1d-v1 chr2: 142821736-142821794 [-] UCSC Ensembl
Mir-10-P1d-v2 chr2: 142821737-142821793 [-] UCSC Ensembl
Variant

Xtr-Mir-10-P1d-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
UCUUGCGAUAUCAAAGAGGCGCUUAUAUGCACCCUGUAGAAUCGAAUUUGUGUGAGUUCUGAACCACAGAUUCGUCUCUAGGGGGGUAUAUGGGUGAUGCUACAGACUUCUCUCUAG
Get precursor sequence
Structure
        10          20        30        40        50        
UCUUGCGAUAUCAAAGAGG--|          A    G    AU          UGAGU 
                     CGCUUAUAUGC CCCU UAGA  CGAAUUUGUG     U
                     GUGGGUAUAUG GGGG AUCU  GCUUAGACAC     C
GAUCUCUCUUCAGACAUCGUA^          -    G    CU          CAAGU 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-10-P1d-v2_5p
mirBase accessionMIMAT0003559
Sequence 
0- ACCCUGUAGAAUCGAAUUUGUGU -23
Get sequence
Proposed targets TargetScanVert: xtr-miR-10c
Star sequence

Xtr-Mir-10-P1d-v2_3p*
mirBase accessionNone
Sequence 
35- ACAGAUUCGUCUCUAGGGGGGU -57
Get sequence
Variant

Xtr-Mir-10-P1d-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
GUCUUGCGAUAUCAAAGAGGCGCUUAUAUGCACCCUGUAGAAUCGAAUUUGUGUGAGUUCUGAACCACAGAUUCGUCUCUAGGGGGGUAUAUGGGUGAUGCUACAGACUUCUCUCUAGG
Get precursor sequence
Structure
        10        20          30        40        50         
GUCUUGCGAUAUCAAAGAGG--|          A    G    AU          UGAGU 
                      CGCUUAUAUGC CCCU UAGA  CGAAUUUGUG     U
                      GUGGGUAUAUG GGGG AUCU  GCUUAGACAC     C
GGAUCUCUCUUCAGACAUCGUA^          -    G    CU          CAAGU 
       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-10-P1d-v1_5p
mirBase accessionMIMAT0003559
Sequence 
0- CACCCUGUAGAAUCGAAUUUGUG -23
Get sequence
Proposed targets TargetScanVert: xtr-miR-10c
Star sequence

Xtr-Mir-10-P1d-v1_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAGAUUCGUCUCUAGGGGGGUA -59
Get sequence