Mir-10-P2d2

MirGeneDB ID

Gmo-Mir-10-P2d2

Family name

MIR-10 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-100a

Paralogues

Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P2c2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gmo-Mir-10-P3c2 Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2d Asp-Mir-10 Bfl-Mir-10-P2-v1 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2d Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2d Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mml-Mir-10-P2d Mmr-Mir-10-P2d Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2d Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4254: 260835-260891 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2d2)

Mir-10-P3d2 GeneScaffold_4254: 252790-252851 [-] UCSC Ensembl
Let-7-P1d2 GeneScaffold_4254: 260452-260518 [-] UCSC Ensembl
Mir-10-P2d2 GeneScaffold_4254: 260835-260891 [-] UCSC Ensembl

Seed

ACCCGUA

Precursor
(pre-Mir +30nt flank)

CGUUUCUGGAGAAUUCCGCCAACUGCCGCAAACCCGUAGAUCCGAACUUGUGGUGACUCUCUGCGCAAGUUCAUAUCUAUAGGUAUGUGUCAAACUGGCAAUUGCAGCCACUGUGUA

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Structure

        10         20         30        40        50        
CGUUUCUGGAGAAUUCC-    AC-| C    A   CG     CC         GUGAC 
                  GCCA   UG CGCA ACC  UAGAU  GAACUUGUG     \
                  CGGU   AC GUGU UGG  AUCUA  CUUGAACGC     U
AUGUGUCACCGACGUUAA    CAA^ U    A   AU     UA         GUCUC 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-10-P2d2_5p

mirBase accession

MIMAT0044035

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

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Star sequence

Gmo-Mir-10-P2d2_3p*

mirBase accession

MIMAT0044036

Sequence

35- CAAGUUCAUAUCUAUAGGUAUG -57

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