Mir-10-P2d

MirGeneDB ID

Bta-Mir-10-P2d

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-100

Paralogues

Bta-Mir-10-P1b-v1 Bta-Mir-10-P1b-v2 Bta-Mir-10-P1c-v1 Bta-Mir-10-P1c-v2 Bta-Mir-10-P2b Bta-Mir-10-P2c Bta-Mir-10-P3b Bta-Mir-10-P3c Bta-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Ami-Mir-10-P2d Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cgi-Mir-10-P2 Cin-Mir-10-P2 Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mml-Mir-10-P2d Mmu-Mir-10-P2d Mun-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ovu-Mir-10-P2 Pbv-Mir-10-P2d Pfl-Mir-10-P2 Pmi-Mir-10-P2 Rno-Mir-10-P2d Sha-Mir-10-P2d Sko-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037342.1: 32818535-32818591 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2d)

Let-7-P1d NC_037342.1: 32812704-32812770 [-] UCSC Ensembl
Mir-10-P2d NC_037342.1: 32818535-32818591 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAGAGAAGAUGCUAAGGCCUGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUGGUAGUGCACACAAGCUUGUGUCUAUAGGUAUGUGUCUGUGGGCGAUCUCACAGACCACGGGC

Get precursor sequence

Structure

        10          20        30        40        50        
CGAGAGAAGAUGCUAAG--|  UG UGC    A   CG    UC   A      GUGGU 
                   GCC  U   CACA ACC  UAGA  CGA CUUGUG     \
                   CGG  G   GUGU UGG  AUCU  GUU GAACAC     A
CGGGCACCAGACACUCUAG^  GU UCU    A   AU    GU   C      ACGUG 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-10-P2d_5p

mirBase accession

MIMAT0009215

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-100

Star sequence

Bta-Mir-10-P2d_3p*

mirBase accession

None

Sequence

35- CAAGCUUGUGUCUAUAGGUAUG -57

Get sequence