MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-10-P1c3-v2

Family name MIR-10 (all species)
Seed CCCUGUA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-10a
Paralogues Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1c4-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P2c4  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1c-v2  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1c-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bta-Mir-10-P1c-v1  Bta-Mir-10-P1c-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cfa-Mir-10-P1c-v2  Cgi-Mir-10-P1  Cli-Mir-10-P1c-v1  Cli-Mir-10-P1c-v2  Cmi-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v2  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v2  Cpo-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dno-Mir-10-P1c-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Ete-Mir-10-P1c-v1  Ete-Mir-10-P1c-v2  Gga-Mir-10-P1c-v1  Gga-Mir-10-P1c-v2  Gja-Mir-10-P1c-v1  Gja-Mir-10-P1c-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hsa-Mir-10-P1c-v1  Hsa-Mir-10-P1c-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1c-v2  Mdo-Mir-10-P1c-v1  Mdo-Mir-10-P1c-v2  Mml-Mir-10-P1c-v1  Mml-Mir-10-P1c-v2  Mmu-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v2  Mun-Mir-10-P1c-v1  Mun-Mir-10-P1c-v2  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Oan-Mir-10-P1c-v2  Ocu-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v2  Pbv-Mir-10-P1c-v1  Pbv-Mir-10-P1c-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Rno-Mir-10-P1c-v1  Rno-Mir-10-P1c-v2  Sha-Mir-10-P1c-v1  Sha-Mir-10-P1c-v2  Sko-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Sto-Mir-10-P1c-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1c-v1  Tgu-Mir-10-P1c-v2  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2 
Node of Origin (locus) X. laevis
Node of Origin (family) Eumetazoa
Genome context
(GCF_001663975.1_XLA_v2)
NC_030740.1: 3499573-3499632 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c3-v2)
Mir-10-P1c3-v1 NC_030740.1: 3499572-3499633 [-] UCSC Ensembl
Mir-10-P1c3-v2 NC_030740.1: 3499573-3499632 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUUGCAGACUUGCCUGUCCUCUGUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGCGCAAUCAUAUCACAAAUUCGUGUCUGGGGGGAUAUGCAGUUGACACAAACGCUACAGAAAGAC
Get precursor sequence
Structure
        10          20        30        40        50          
UAUUUGCAGACUUGCCU--|  CU        A    G    UC          UGAGCGC 
                   GUC  CUGUAUGU CCCU UAGA  CGAAUUUGUG       \
                   CAG  GACGUAUA GGGG GUCU  GCUUAAACAC       A
CAGAAAGACAUCGCAAACA^  UU        -    G    GU          UAUACUA 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-10-P1c3-v2_5p

mirBase accessionMIMAT0046422
Sequence
0- ACCCUGUAGAUCCGAAUUUGUGU -23
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Star sequence

Xla-Mir-10-P1c3-v2_3p*

mirBase accessionMIMAT0046423
Sequence
38- ACAAAUUCGUGUCUGGGGGGAU -60
Get sequence