MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-10-P1c3

Family name MIR-10 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-10a
Paralogues Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P2c4  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1c-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1c-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1c-v1  Gja-Mir-10-P1c-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1c-v1  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1c-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1c-v1 
Node of Origin (locus) X. laevis
Node of Origin (family) Eumetazoa
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030740.1: 3499573-3499632 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c3-v2)		 Mir-10-P1c3-v1 NC_030740.1: 3499572-3499633 [-] UCSC Ensembl
Mir-10-P1c3-v2 NC_030740.1: 3499573-3499632 [-] UCSC Ensembl
Variant

Xla-Mir-10-P1c3-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
UAUUUGCAGACUUGCCUGUCCUCUGUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGCGCAAUCAUAUCACAAAUUCGUGUCUGGGGGGAUAUGCAGUUGACACAAACGCUACAGAAAGAC
Get precursor sequence
Structure
        10          20        30        40        50          
UAUUUGCAGACUUGCCU--|  CU        A    G    UC          UGAGCGC 
                   GUC  CUGUAUGU CCCU UAGA  CGAAUUUGUG       \
                   CAG  GACGUAUA GGGG GUCU  GCUUAAACAC       A
CAGAAAGACAUCGCAAACA^  UU        -    G    GU          UAUACUA 
.       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Em
Mature sequence

Xla-Mir-10-P1c3-v2_5p
mirBase accessionMIMAT0046422
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUGU -23
Get sequence
Star sequence

Xla-Mir-10-P1c3-v2_3p*
mirBase accessionMIMAT0046423
Sequence 
38- ACAAAUUCGUGUCUGGGGGGAU -60
Get sequence
Variant

Xla-Mir-10-P1c3-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
AUAUUUGCAGACUUGCCUGUCCUCUGUAUGUACCCUGUAGAUCCGAAUUUGUGUGAGCGCAAUCAUAUCACAAAUUCGUGUCUGGGGGGAUAUGCAGUUGACACAAACGCUACAGAAAGACG
Get precursor sequence
Structure
        10          20        30        40        50        60 
AUAUUUGCAGACUUGCC--|   CU        A    G    UC          UGAGCGC 
                   UGUC  CUGUAUGU CCCU UAGA  CGAAUUUGUG       \
                   ACAG  GACGUAUA GGGG GUCU  GCUUAAACAC       A
GCAGAAAGACAUCGCAAAC^   UU        -    G    GU          UAUACUA 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em
Mature sequence

Xla-Mir-10-P1c3-v1_5p
mirBase accessionMIMAT0046422
Sequence 
0- UACCCUGUAGAUCCGAAUUUGUG -23
Get sequence
Star sequence

Xla-Mir-10-P1c3-v1_3p*
mirBase accessionMIMAT0046423
Sequence 
40- CAAAUUCGUGUCUGGGGGGAUA -62
Get sequence