MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-10-P1d

Family name MIR-10 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-10-P1b-v1  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P2c  Loc-Mir-10-P2d  Loc-Mir-10-P3b  Loc-Mir-10-P3c  Loc-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1d1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Mal-Mir-10-P1d1-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tni-Mir-10-P1d1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(LepOcu1)		 LG4: 15933792-15933850 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d-v2)		 Mir-10-P1d-v1 LG4: 15933791-15933851 [+] Ensembl
Mir-10-P1d-v2 LG4: 15933792-15933850 [+] Ensembl
Variant

Loc-Mir-10-P1d-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
CUUUCCUACCCUCAUCAGUCGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAGCAGCAAAAAUCGCAAAUUCGUCUCUAGGGGAAUACAUGGGCGAUGCCAAUACCGCAGUGGCAC
Get precursor sequence
Structure
        10          20        30        40        50         
CUUUCCUACCCUCAUCA--|        A   A    G    AC          UGAGCA 
                   GUCGUCUAU UGU CCCU UAGA  CGAAUUUGUG      G
                   UAGCGGGUA AUA GGGG AUCU  GCUUAAACGC      C
CACGGUGACGCCAUAACCG^        C   A    -    CU          UAAAAA 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-10-P1d-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAACCGAAUUUGUGU -23
Get sequence
Star sequence

Loc-Mir-10-P1d-v2_3p*
mirBase accessionNone
Sequence 
37- GCAAAUUCGUCUCUAGGGGAAU -59
Get sequence
Variant

Loc-Mir-10-P1d-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
ACUUUCCUACCCUCAUCAGUCGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAGCAGCAAAAAUCGCAAAUUCGUCUCUAGGGGAAUACAUGGGCGAUGCCAAUACCGCAGUGGCACG
Get precursor sequence
Structure
        10          20        30        40        50        60
ACUUUCCUACCCUCAUCA--|        A   A    G    AC          UGAGCA 
                    GUCGUCUAU UGU CCCU UAGA  CGAAUUUGUG      G
                    UAGCGGGUA AUA GGGG AUCU  GCUUAAACGC      C
GCACGGUGACGCCAUAACCG^        C   A    -    CU          UAAAAA 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-10-P1d-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAACCGAAUUUGUG -23
Get sequence
Star sequence

Loc-Mir-10-P1d-v1_3p*
mirBase accessionNone
Sequence 
39- CAAAUUCGUCUCUAGGGGAAUA -61
Get sequence