MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-10-P5

Family name MIR-10 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-10-P1  Mgi-Mir-10-P2  Mgi-Mir-10-P3  Mgi-Mir-10-P6 
Orthologues Adi-Mir-10  Agr-Mir-10-P5  Asp-Mir-10  Cte-Mir-10-P5  Eba-Mir-10-P5  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Hru-Mir-10-P5  Lgi-Mir-10-P5  Lhy-Mir-10-P5  Llo-Mir-10-P5a-v1  Llo-Mir-10-P5b-v1  Mom-Mir-10-P5  Nve-Mir-10  Ofu-Mir-10-P5  Pau-Mir-10-P5  Pdu-Mir-10-P5  Pve-Mir-10-P5  Rph-Mir-10-P5  Snu-Mir-10-P5  War-Mir-10-P5 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Eumetazoa
Genome context
(CGI_GCA_000297895.1)		 scaffold145: 700580-700637 [+] Ensembl
Seed UACCCUG
Precursor
(pre-Mir +30nt flank)		 
UCAUCCAUACUCGUAAAAGCCAUGUCUUUUUUACCCUGUAGAACCGAGCGAGUGUAGCCGGUAACACAGCUCGUUUCUGAGGGUUCACAAGACUUUGGAUCAUGCUGCUGAUGUCUGU
Get precursor sequence
Structure
        10         20         30        40        50         
UCAUCCAUACUCGUAAAAG-   U-|    UUUU     G     C     GA   UAGC 
                    CCA  GUCUU    ACCCU UAGAA CGAGC  GUG    C
                    GGU  CAGAA    UGGGA GUCUU GCUCG  CAC    G
UGUCUGUAGUCGUCGUACUA   UU^    CACU     -     U     A-   AAUG 
      110       100        90        80         70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-10-P5_5p
mirBase accessionNone
Sequence 
0- UUACCCUGUAGAACCGAGCGAGUG -24
Get sequence
Star sequence

Mgi-Mir-10-P5_3p*
mirBase accessionNone
Sequence 
36- CAGCUCGUUUCUGAGGGUUCAC -58
Get sequence