MirGeneDB 2.1
MirGeneDB ID

Asu-Mir-10-P2o5

Family name MIR-10 (all species)
Seed ACCCGUA
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-100a-2
Paralogues Asu-Mir-10-P1  Asu-Mir-10-P2o3  Asu-Mir-10-P2o4  Asu-Mir-10-P2o6  Asu-Mir-10-P2o7  Asu-Mir-10-P2o8  Asu-Mir-10-P3  Asu-Mir-10-P4 
Orthologues Aae-Mir-10-P2  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Isc-Mir-10-P2  Lan-Mir-10-P2  Lgi-Mir-10-P2  Lpo-Mir-10-P2o  Npo-Mir-10-P2  Nve-Mir-10  Obi-Mir-10-P2  Ovu-Mir-10-P2  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Sko-Mir-10-P2  Tca-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) A. suum
Node of Origin (family) Eumetazoa
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold488: 2112876-2112933 [-]
Clustered miRNAs
(< 50kb from Mir-10-P2o5)		 Let-7-P5 Scaffold488: 2112674-2112739 [-]
Mir-10-P2o5 Scaffold488: 2112876-2112933 [-]
Precursor
(pre-Mir +30nt flank)
UUGUGUACUGAAGCAGGGGUGUGUGCGGUCAACCCGUAGAUCCGAACUUGUGUUGGGUUUGGUAACAUGAGCUCGGCACUCGGGUAGACUGCGUCAUCCCAGCCCGCCACCCAAUGCC
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Structure
        10         20         30        40        50         
UUGUGUACUGAAGCAGG-  UG  -|      A     U  AU    A  UG    GGGU 
                  GG  UG UGCGGUC ACCCG AG  CCGA CU  UGUU    \
                  CC  AC GCGUCAG UGGGC UC  GGCU GA  ACAA    U
CCGUAACCCACCGCCCGA  CU  U^      A     -  AC    C  GU    UGGU 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-10-P2o5_5p
mirBase accessionMIMAT0021487
Sequence 
0- AACCCGUAGAUCCGAACUUGUGUU -24
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Star sequence

Asu-Mir-10-P2o5_3p*
mirBase accessionMIMAT0022835
Sequence 
35- CAUGAGCUCGGCACUCGGGUAGA -58
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