Let-7-P5

MirGeneDB ID

Asu-Let-7-P5

Family name

LET-7 (all species)

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-let-7

Paralogues

Asu-Let-7-P6

Orthologues

Aae-Let-7 Aga-Let-7 Agr-Let-7 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Cbr-Let-7-P5 Cel-Let-7-P5 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Egr-Let-7 Esc-Let-7 Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Mgi-Let-7 Mom-Let-7 Npo-Let-7 Obi-Let-7 Ofu-Let-7 Ovu-Let-7 Pau-Let-7 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rph-Let-7 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spu-Let-7 Sro-Let-7 Tca-Let-7 Tur-Let-7 War-Let-7 Xbo-Let-7

Node of Origin (locus)

Chromadorea

Node of Origin (family)

Bilateria

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold488: 2112674-2112739 [-]

Clustered miRNAs
(< 50kb from Let-7-P5)

Let-7-P5 Scaffold488: 2112674-2112739 [-]
Mir-10-P2o5 Scaffold488: 2112876-2112933 [-]

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

AUAUUGAACAGCGCGGCAAGGUCUGCUCGUUGAGGUAGUAGGUUGUAUAGUUGCGAGCUGCAUCCUUUCGAGAAACUGUCCAGCCUGCUAGCUUGCCGCGCGGACCGACGCUCAUGUAAUGAGUUA

Get precursor sequence

Structure

        10         20        30        40        50        60   
AUAUUGAACAGCGCGGCAA-|      U  UU   G          U      GCGAGCUGCA 
                    GGUCUGC CG  GAG UAGUAGGUUG AUAGUU          \
                    CCAGGCG GC  UUC AUCGUCCGAC UGUCAA          U
AUUGAGUAAUGUACUCGCAG^      C  CG   G          C      AGAGCUUUCC 
    120       110       100        90        80        70