MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-10-P2o2

Family name MIR-10 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-100b
Paralogues Pma-Mir-10-P1o1  Pma-Mir-10-P1o2  Pma-Mir-10-P2o1  Pma-Mir-10-P3o1  Pma-Mir-10-P3o2 
Orthologues Aae-Mir-10-P2  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bpl-Mir-10-P2  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cin-Mir-10-P2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Isc-Mir-10-P2  Lan-Mir-10-P2  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Lpo-Mir-10-P2o  Mgi-Mir-10-P2  Mom-Mir-10-P2  Npo-Mir-10-P2  Nve-Mir-10  Obi-Mir-10-P2  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pau-Mir-10-P2  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rph-Mir-10-P2  Sko-Mir-10-P2  Snu-Mir-10-P2  Tca-Mir-10-P2  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) P. marinus
Node of Origin (family) Eumetazoa
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046130.1: 3628195-3628257 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2o2)		 Mir-10-P2o2 NC_046130.1: 3628195-3628257 [+] UCSC Ensembl
Mir-10-P3o2 NC_046130.1: 3640038-3640096 [+] UCSC Ensembl
Seed ACCCGUA
Precursor
(pre-Mir +30nt flank)		 
CGGCGCGCGCGAGUCGAGCUGAUCGCCACAAACCCGUAGAUUCGAACUUGGGGGGGGCUGAAAUCCGAACACAAGGUCGCUUCUGUGGGUGUGUGGAGGUCACGCAAAAGACACGCGGUCGUG
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Structure
        10          20        30        40        50        60 
CGGCGCGCGCGAGUCGA-  -|    G     A         UU   A    GGGGGGGCUG 
                  GC UGAUC CCACA ACCCGUAGA  CGA CUUG          \
                  CG ACUGG GGUGU UGGGUGUCU  GCU GAAC          A
GUGCUGGCGCACAGAAAA  C^    A     G         UC   G    ACAAGCCUAA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-10-P2o2_5p
mirBase accessionMIMAT0019439
Sequence 
0- AACCCGUAGAUUCGAACUUGGG -22
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Star sequence

Pma-Mir-10-P2o2_3p* (predicted)
mirBase accessionNone
Sequence 
41- CAAGGUCGCUUCUGUGGGUGUG -63
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