MirGeneDB ID | Pfl-Mir-10-P3j1 |
Family name |
MIR-10 (all species) |
Seed |
CCCUGAG |
Species |
Ptychodera (Ptychodera flava) |
MiRBase ID |
|
Paralogues |
Pfl-Mir-10-P1
Pfl-Mir-10-P2
Pfl-Mir-10-P3j2
Pfl-Mir-10-P3k
Pfl-Mir-10-P3l
|
Orthologues |
Aae-Mir-10-P3
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Cgi-Mir-10-P3
Cin-Mir-10-P3
Cte-Mir-10-P3
Dan-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dpu-Mir-10-P3
Dsi-Mir-10-P3
Dya-Mir-10-P3
Esc-Mir-10-P3
Isc-Mir-10-P3
Lan-Mir-10-P3
Lgi-Mir-10-P3
Nve-Mir-10
Obi-Mir-10-P3
Ovu-Mir-10-P3
Pmi-Mir-10-P3
Sko-Mir-10-P3
Spu-Mir-10-P3
Tca-Mir-10-P3
Xbo-Mir-10-P3
|
Node of Origin (locus) |
P. flava
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Pfl) |
LD350399.1: 17402-17460 [+]
|
Precursor (pre-Mir +30nt flank) |
ACCCACGAUACCGUUCUGUGUGCUCCCCGAUCCCUGAGACCCUAACUUGUGAUGUUACCCACAAUUCACAGGUUAGUUGCUCAGGUACUGGGUGGCAUAAACGAGCUACAGGAAGUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCCACGAUACCGUUCUG--| UC AUC ACC UGUUAC
UGUGC CCCG CCUGAG CUAACUUGUGA \
AUACG GGGU GGACUC GAUUGGACACU C
CUUUGAAGGACAUCGAGCAA^ GU CAU GUU UAACAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Pfl-Mir-10-P3j1_5p |
mirBase accession | None |
Sequence |
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
|
Star sequence |
Pfl-Mir-10-P3j1_3p* |
mirBase accession | None |
Sequence |
37- ACAGGUUAGUUGCUCAGGUACU -59
Get sequence
|