MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-10-P3t

Family name MIR-10 (all species)
Seed CCCUGAG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-125b
Paralogues Sme-Mir-10-P1s  Sme-Mir-10-P1t  Sme-Mir-10-P3s  Sme-Mir-10-P3u 
Orthologues Aae-Mir-10-P3  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Nve-Mir-10  Obi-Mir-10-P3  Ovu-Mir-10-P3  Pmi-Mir-10-P3  Sko-Mir-10-P3  Spu-Mir-10-P3  Tca-Mir-10-P3  Xbo-Mir-10-P3 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Eumetazoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000057_dd_Smes_g4_57: 685972-686034 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUAUUCCAUUUCUGCAAGUUAUUCGACAUCCCUGAGAUCAUAAUAUGCCUGAGAUUUGAACGCAAACCGGUAGAUUAUUGUCUCAGAGUAAUUGAUAAACUGCAAACUUCAAUUUUAAAUC
Get precursor sequence
Structure
        10          20        30        40        50        60 
UUUUAUUCCAUUUCUGCA--|   AU    CAUCC       C     A    UGAGAUUUG 
                    AGUU  UCGA     CUGAGAU AUAAU UGCC         \
                    UCAA  AGUU     GACUCUG UAUUA AUGG         A
CUAAAUUUUAACUUCAAACG^   AU    AAUGA       U     G    CCAAACGCA 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-10-P3t_5p
mirBase accessionMIMAT0003998
Sequence 
0- UCCCUGAGAUCAUAAUAUGCCU -22
Get sequence
Star sequence

Sme-Mir-10-P3t_3p*
mirBase accessionMIMAT0012114
Sequence 
41- GUAGAUUAUUGUCUCAGAGUAA -63
Get sequence