Mir-10-P6

MirGeneDB ID

Rph-Mir-10-P6

Family name

MIR-10 (all species)

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-10-P1 Rph-Mir-10-P2 Rph-Mir-10-P3 Rph-Mir-10-P5

Orthologues

Adi-Mir-10 Agr-Mir-10-P6 Asp-Mir-10 Cte-Mir-10-P6 Eba-Mir-10-P6 Efe-Mir-10-P6 Esc-Mir-10-P6 Hru-Mir-10-P6 Lgi-Mir-10-P6 Lhy-Mir-10-P6 Mgi-Mir-10-P6 Mom-Mir-10-P6 Npo-Mir-10-P6 Nve-Mir-10 Obi-Mir-10-P6 Ofu-Mir-10-P6 Ovu-Mir-10-P6 Pve-Mir-10-P6 War-Mir-10-P6

Node of Origin (locus)

Neotrochozoa

Node of Origin (family)

Eumetazoa

Genome context
(Ruditapes_GCA_009026015)

CM018531.1: 33041915-33041975 [+] Ensembl

Seed

UCUCGUU

Precursor
(pre-Mir +30nt flank)

AAAUACAAGAUUGUCUGGAAAUCUAGUAAUCUUACCCUGUAAAUCGGAGAAGUGUUCAUUUAGACUGACUUCUCGUUUCACAGGGUAUAUUUACUUACCAGAGUUUGACAGCAGACGACCG

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Structure

        10        20            30        40         50        60
AAAUACAAGAUUGUCUGGAAA   ----     UCU        -|   CG       GUUCAU 
                     UCU    AGUAA   UACCCUGU AAAU  GAGAAGU      U
                     AGA    UCAUU   AUGGGACA UUUG  CUCUUCA      U
GCCAGCAGACGACAGUUUG--   CCAU     UAU        C^   --       GUCAGA 
 .       110         100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Star sequence

Rph-Mir-10-P6_5p*

mirBase accession

None

Sequence

0- CUUACCCUGUAAAUCGGAGAAGU -23

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Mature sequence

Rph-Mir-10-P6_3p

mirBase accession

None

Sequence

39- UUCUCGUUUCACAGGGUAUAUU -61

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