MirGeneDB 2.1

MirGeneDB ID

Pbv-Let-7-P2a1

Family name LET-7 (all species)
Seed GAGGUAG
Species Burmese python (Python bivittatus)
MiRBase ID pbv-let-7a-1
Paralogues Pbv-Let-7-P1b  Pbv-Let-7-P1c  Pbv-Let-7-P1d  Pbv-Let-7-P2a2  Pbv-Let-7-P2a3  Pbv-Let-7-P2a4  Pbv-Let-7-P2b1  Pbv-Let-7-P2b2  Pbv-Let-7-P2b3  Pbv-Let-7-P2b4  Pbv-Let-7-P2c1  Pbv-Let-7-P2c2  Pbv-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a1  Ami-Let-7-P2a1  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a1  Cfa-Let-7-P2a1  Cgi-Let-7  Cli-Let-7-P2a1  Cmi-Let-7-P2a1  Cpi-Let-7-P2a1  Cpo-Let-7-P2a1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a1  Dpu-Let-7  Dre-Let-7-P2a1a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a1  Gga-Let-7-P2a1  Gja-Let-7-P2a1  Gmo-Let-7-P2a1a  Hme-Let-7  Hsa-Let-7-P2a1  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a1  Lgi-Let-7  Loc-Let-7-P2a1  Mal-Let-7-P2a1a  Mdo-Let-7-P2a1  Mml-Let-7-P2a1  Mmu-Let-7-P2a1  Mun-Let-7-P2a1  Npo-Let-7  Oan-Let-7-P2a1  Obi-Let-7  Ocu-Let-7-P2a1  Ovu-Let-7  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a1  Sha-Let-7-P2a1  Sko-Let-7  Spt-Let-7-P2a1  Spu-Let-7  Sto-Let-7-P2a1  Tca-Let-7  Tgu-Let-7-P2a1  Xbo-Let-7  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xtr-Let-7-P2a1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953102.1: 568879-568950 [-]
Clustered miRNAs
(< 50kb from Let-7-P2a1)
Let-7-P2c1 KE953102.1: 567802-567876 [-]
Let-7-P2b1 KE953102.1: 568377-568453 [-]
Let-7-P2a1 KE953102.1: 568879-568950 [-]
Precursor
(pre-Mir +30nt flank)
UCUAUUAAAUGAAGAUACUGCUCUGUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCAUACCCACCACUGGGAGAUAACUAUACAGUCUACUGUCUUUCCUAAGGAGGCAGAUAGUCAUCAGCAACAUU
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Structure
        10         20         30        40        50        60      
UCUAUUAAAUGAAGAUA-   -|   G     U   GU     GU         UUAGGGUCAUACC 
                  CUG CUCU UGGGA GAG  AGUAG  UGUAUAGUU             \
                  GAC GAGG AUCCU UUC  UCAUC  ACAUAUCAA             C
UUACAACGACUACUGAUA   G^   A     -   UG     UG         UAGAGGGUCACCA 
130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Pbv-Let-7-P2a1_5p

mirBase accessionMIMAT0038793
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Pbv-Let-7-P2a1_3p*

mirBase accessionMIMAT0038794
Sequence
51- CUAUACAGUCUACUGUCUUUC -72
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